Query= MSMg01no518_a18.b1 MSMg01no518_a18.b1 CHROMAT_FILE:
MSMg01no518_a18.b1 PHD_FILE: MSMg01no518_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:20 2005
(693 letters)
>mm_chr15_14379983_14381075
Length = 1093
Score = 1118 bits (578), Expect = 0.0
Identities = 658/688 (95%), Gaps = 8/688 (1%)
Strand = Plus / Minus
Query: 5 gaattcatgtgtgtgcacaagaaacatactaacagatacactaaattttaatgtatgtac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gaattcatgtgtgtgcacaagaaacatactaacagatacactaaattttaatgtatgtac 729
Query: 65 taaagtagctgattctctttacataagttaaaaatgtcctcccaaatccataatttatat 124
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 728 taaagtagccgattctctttacataagttaaaaatgtcctcccaaatctataatttatat 669
Query: 125 tttgtattaattataattttcactgggtcaatttatagcaaagtattaatttgtaaaagg 184
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 668 tttgtattaattataattttcactgggttaacttatagcaaagtattaatttgtaaaagg 609
Query: 185 caagttttatattataccttttgtgatagtctaatttcttcttaaattccatcttgactt 244
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 608 caagttttatattataccttttgtgataatttaatttcttcttaaattccatcttgactt 549
Query: 245 tgataaactatattttatgtaccataggaatcattatcccatgactttggatgacctttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgataaactatattttatgtaccataggaatcattatcccatgactttggatgacctttt 489
Query: 305 ccaatattatattcactatatggctagatgttcattcaccactatttaaatgttagaatt 364
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 488 ccaatattatattcattatatggctagatgatcattcaccactatttaaatgttagaatt 429
Query: 365 ttaaagagtaactgggagattaaaatttactgtttgtcattgaactttatatttcctttc 424
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 428 gtaaagagtaactgggagattaaaatttactgtttgccattgaactttatatttcctttc 369
Query: 425 agatactcataccagtaagtatgtttcgtttgtttgtttgtttttttgtttttcaagaca 484
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 368 agatactcataccagtaagtatgtttcatttgtttgtttgtttttt-gtttttcaagaca 310
Query: 485 gggtttctctgtgtagccctggctttcctggaaatcattctatagaccagattggtgtcg 544
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||
Sbjct: 309 gggtttctctgtgtagccctggctttcctggaactcattctgtagaccaggctggtgtca 250
Query: 545 aactcagaaatctgtctgcctct---tcctcctaagtgctgggattaaaggcgtgtacca 601
||||||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 249 aactcagaaatctgtctgcctctgtgtc----taagtgctgggattgaaggcatgcgcca 194
Query: 602 tcactgcccagcataagtatgttatttaatttactttaaaagaattttatcttagtatgc 661
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 193 ccactgcccagcataagtatgttatttgatttactttaaaagaattttatcttagtatgc 134
Query: 662 ttgatcaaaaactagttatacataggaa 689
||||||||||||||||||||||||||||
Sbjct: 133 ttgatcaaaaactagttatacataggaa 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_a18.g1 MSMg01no518_a18.g1 CHROMAT_FILE:
MSMg01no518_a18.g1 PHD_FILE: MSMg01no518_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:20 2005
(658 letters)
>mm_chr15_14248871_14249928
Length = 1058
Score = 1189 bits (615), Expect = 0.0
Identities = 645/657 (98%), Gaps = 4/657 (0%)
Strand = Plus / Plus
Query: 2 acaatttctgctcaacaccagaatctatggaaaggcaatgaatggaacttccagataaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acaatttctgctcaacaccagaatctatggaaaggcaatgaatggaacttccagataaaa 261
Query: 62 tcaaggaagaggctgacactctgatgacactgtcctcatgggcatataggactgaaaagc 121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 tcaaggaagaggctgacactctgatgacactgtcctcatggacatataggactgaaaagc 321
Query: 122 actttagccacaggatgtgtggcacttttatggagccttagaattcaggaggccaccctg 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 actttagccacaggatgtgtggcacttttatggagccttagaattcaggaggccactctg 381
Query: 182 caagacaaagaacaagaagctacaagagaacaagagtgcttagaaaggagaaaagtactc 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 caagacaaagaacaagaagctacaagagaacaagggtgcttagaaaggagaaaagtactc 441
Query: 242 cccagagaaaaacacataaattggtaccaaatagtcagtcttgaaaatatacctctaagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cccagagaaaaacacataaattggtaccaaatagtcagtcttgaaaatatacctctaagt 501
Query: 302 aatactctacagaaagaggcaggtggtatcaattcatttttatatatatttagacacaca 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatactttacagaaagaggcaggtggtatcaattcatttttatatatatttagacacaca 561
Query: 362 cacgtacacacacacacatatgtatatatacatatacatacatatatatatatatacatg 421
|| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 562 catgcacacacacacacatatgtatatatacatatacatgcatatatatata----catg 617
Query: 422 catatataagtagttataaatgtatgtaaatatgtataacaattaatgaaaaaatagtca 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catatataagtagttatatatgtatgtaaatatgtataacaattaatgaaaaaatagtca 677
Query: 482 tgaatttgaaagagagcaaactgggctaagtggaagagacttgagggagaaatggaaaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgaatttgaaagagagcaaactgggctaagtggaagagacttgagggagaaatggaaaga 737
Query: 542 gaaaaagggtgtaataatagtataatcttaaaaactaaatgagttattttttaaaattta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaaaaagggtgtaataatagtataatcttaaaaactaaatgagttattttttaaaattta 797
Query: 602 agcaagaccaaatttgtcccttcttctagtagacatggaaatgctgatcagtctgag 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agcaagaccaaatttgtcccttcttctagtagacatggaaatgctgatcagtctgag 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
