BAC Information

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BAC

Clone NameMSMg01-519B02
Chromosome15 (Build37)
Map Location 28,962,371 - 29,108,907
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519B02.T7 (MSMg01no519_b02.b1)MSMg01-519B02.TJ (MSMg01no519_b02.g1)
ACCAG590428AG590429
length726730
length of high quality
(start - end)		685 (42 - 726)658 (73 - 730)
definitionCHROMAT_FILE: MSMg01no519_b02.b1 PHD_FILE: MSMg01no519_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:40 2005CHROMAT_FILE: MSMg01no519_b02.g1 PHD_FILE: MSMg01no519_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,108,451 - 29,108,907)(28,962,371 - 28,963,027)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCATCCTATATATTTGAGAACTAAAAAGATTTAGAAAGCACATTTAAG
TGTGTACAATGTGCATGTCAAGTGTCCAACATGCTATTAGTGTGGGATGT
TGTCTCTACCTTTTTTCTCTTCCAGTGATTGAACCTGCAACATGGCTCTT
GACAAATTTGTATATTTGTTTGTTTAATATGTATCTCAAATATTCAGTAA
GATTTGTAATATCTTTACTCTTAATTTTTAAAATTGTTCTTTTTGCTCTG
TGTGTGGGCTTGTGAATATGTGTGTGAGTATACATGAGTGCATGTGCAGG
TGTGTGTGTACATGAATGTATGTGCAGGTATGTATGAATGTGTGTGTGTG
TGCGCGCACATGCACATGAATGCATGTACAGGAATGTTCATATATGAATA
CATGTGCAGGTGTGTGTGTGTGTACATGAGTGTATGTGCATGTGTGTGTG
TACATGAATGTATGTGCAGGTGTGTGTGTGTGCATGAATGTATGTGCAGG
TGTGCGGGCGTATAAATGGGGGTCAGTCATGTTCTGCAATCATTCTTCAC
CATAGATTTTAAGACAGAGTCTCTCTCTGAACCTAGAATTCACAAATTTG
GTAAGATCAGGTGTTAGTGTTCTCTACAACTAACCCATGATGGAATTGTA
GACATTTGCTACCTCTGGCAAGTATN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGGTTTCTATTAAAAGATTTAAAGTG
AAATTTAACGTTTGAGAATTGCACACATGAATATAATGTGTTTTAAACAA
GTTCACTCCCATTCTTCTCTCTCTAATTCTTACCCTATCGCCTACACCAA
TTTTCTCTTTCAATTTCAAGGACTTTCCTAAAATAACCACTGGTTGCTAT
GAGTATGTATACTGGTGTGGGGCCATCTGCTAGACCAGTGACGGCCTTTA
AGGGGCCACAATCCTGAGGAAAACTGATTCTTCCTTCTACAGTAGCCAAC
TATTGACAATACTTCCTCAGCTAAGCGTGGGGCTTTTTGTGCCCCTTCCC
ATCCATGGTGTGGCTTTGCCTTGCTCAGTCTTGTACAACTCTCTCTCACA
CCATATGGGTTGATGAGGTCATGGATTCCTCAGACCTGTCGTATCAGAAA
ACAATTGTTTCTGTTGCTGCTGTTTTCCCCATATTACAATAATGAGGCTG
TTTTCACAGAGGACTCATATAAATATTCAAAGTTTCCTCGTTAGGAAATA
AGAGACAAATTTCTGTAGATATTCATATTACACCTTGATGGTCTCCTTAG
TTCAGGAAGAACACAGAGAATAACAGCACATTTAGTTCAAGAAGAACTCA
GAGAATTACAGTACAGTCTAATACATAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_b02.b1 MSMg01no519_b02.b1 CHROMAT_FILE:
MSMg01no519_b02.b1 PHD_FILE: MSMg01no519_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:40 2005
         (685 letters)



>mm_chr15_29108451_29109535
          Length = 1085

 Score =  853 bits (441), Expect = 0.0
 Identities = 453/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccatcctatatatttgagaactaaaaagatttagaaagcacatttaagtgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaattcaccatcctatatatttgagaactaaaaagatttagaaagcacatttaagtgtg 398

                                                                       
Query: 64  tacaatgtgcatgtcaagtgtccaacatgctattagtgtgggatgttgtctctacctttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacaatgtgcatgtcaagtgtccaacatgctattagtgtgggatgttgtctctacctttt 338

                                                                       
Query: 124 ttctcttccagtgattgaacctgcaacatggctcttgacaaatttgtatatttgtttgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttctcttccagtgattgaacctgcaacatggctcttgacaaatttgtatatttgtttgtt 278

                                                                       
Query: 184 taatatgtatctcaaatattcagtaagatttgtaatatctttactcttaatttttaaaat 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 277 taatatgtatctcaaatattcagtaaaatttgtaatatctttactcttaatttttaaaat 218

                                                                       
Query: 244 tgttctttttgctctgtgtgtgggcttgtgaatatgtgtgtgagtatacatgagtgcatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tgttctttttgctctgtgtgtgggcttgtgaatatgtgtgtgagtatacatgagtgcatg 158

                                                                       
Query: 304 tgcaggtgtgtgtgtacatgaatgtatgtgcaggtatgtatgaatgtgtgtgtgtgtgcg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 157 tgcaggtgtgtgtgtacatgaatgtatgtgcaggtatgtatgaatgtgtgtgtgtgtacg 98

                                                                       
Query: 364 cgcacatgcacatgaatgcatgtacaggaatgttcatatatgaatacatgtgcaggtgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  cgcacatgcacatgaatgcatgtacaggaatgttcatatatgaatacatgtgcaggtgtg 38

                                                
Query: 424 tgtgtgtgtacatgagtgtatgtgcatgtgtgtgtgt 460
           ||||||||||||||| |||||||||| ||||||||||
Sbjct: 37  tgtgtgtgtacatgaatgtatgtgcaggtgtgtgtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_b02.g1 MSMg01no519_b02.g1 CHROMAT_FILE:
MSMg01no519_b02.g1 PHD_FILE: MSMg01no519_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:40 2005
         (658 letters)



>mm_chr15_28962171_28963228
          Length = 1058

 Score = 1247 bits (645), Expect = 0.0
 Identities = 654/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtttctattaaaagatttaaagtgaaatttaacgtttgagaattgcacacatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttgggtttctattaaaagatttaaagtgaaatttaacgtttgagaattgcacacatgcat 260

                                                                       
Query: 61  ataatgtgttttaaacaagttcactcccattcttctctctctaattcttaccctatcgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ataatgtgttttaaacaagttcactcccattcttctctctctaattcttaccctatcacc 320

                                                                       
Query: 121 tacaccaattttctctttcaatttcaaggactttcctaaaataaccactggttgctatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaccaattttctctttcaatttcaaggactttcctaaaataaccactggttgctatga 380

                                                                       
Query: 181 gtatgtatactggtgtggggccatctgctagaccagtgacggcctttaaggggccacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatgtatactggtgtggggccatctgctagaccagtgacggcctttaaggggccacaat 440

                                                                       
Query: 241 cctgaggaaaactgattcttccttctacagtagccaactattgacaatacttcctcagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgaggaaaactgattcttccttctacagtagccaactattgacaatacttcctcagct 500

                                                                       
Query: 301 aagcgtggggctttttgtgccccttcccatccatggtgtggctttgccttgctcagtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcgtggggctttttgtgccccttcccatccatggtgtggctttgccttgctcagtctt 560

                                                                       
Query: 361 gtacaactctctctcacaccatatgggttgatgaggtcatggattcctcagacctgtcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtacaactctctctcacaccatatgggttgatgaggtcatggattcctcagacctgtcgt 620

                                                                       
Query: 421 atcagaaaacaattgtttctgttgctgctgttttccccatattacaataatgaggctgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcagaaaacaattgtttctgttgctgctgttttccccatattacaataatgaggctgtt 680

                                                                       
Query: 481 ttcacagaggactcatataaatattcaaagtttcctcgttaggaaataagagacaaattt 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ttcacagaggactcatataaatattcaaagtttccttgttaggaaataagagacaaattt 740

                                                                       
Query: 541 ctgtagatattcatattacaccttgatggtctccttagttcaggaagaacacagagaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtagatattcatattacaccttgatggtctccttagttcaggaagaacacagagaata 800

                                                                    
Query: 601 acagcacatttagttcaagaagaactcagagaattacagtacagtctaatacataga 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acagcacatttagttcaagaagaactcagagaattacagtacagtctaatacataga 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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