BAC Information

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BAC

Clone NameMSMg01-519G21
Chromosome15 (Build37)
Map Location 69,175,001 - 69,277,562
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519G21.T7 (MSMg01no519_g21.b1)MSMg01-519G21.TJ (MSMg01no519_g21.g1)
ACCAG590704AG590705
length756764
length of high quality
(start - end)
642 (37 - 678)458 (69 - 526)
definitionCHROMAT_FILE: MSMg01no519_g21.b1 PHD_FILE: MSMg01no519_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:08 2005CHROMAT_FILE: MSMg01no519_g21.g1 PHD_FILE: MSMg01no519_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,276,953 - 69,277,562)(69,175,001 - 69,175,454)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATG
TCTTCCTAGATCTGCTGATATATATAAAATTTGTAGTCTTTTCCTCTTGT
GTTCAAGCCATTCTTTTCCTCCAGATGCATAAAGACAATGAAGTGGGCAT
CAATTCTCCTGGTCCTCTAGCTTGCTGAGTCAGGCTACTCCTAGTGCATG
CGGCCAATAGTCTTCTACAAAAGTAGACGAGAACACAGCAGGAATCAAAC
CTGGAAGTCAAAGTCTCAGAATTCATTTGTTGGGTGTCATTTAATATATA
GTCAAATCTCAGCTGATCAGAAGGTCTGGATAAGCAAGAATATTGAGCTA
GAAGTACTCCATGGAGTGAGTATTGATTATACCCTTAATGGCACTGCAGA
GTATTGACTGAGAATTCAATTAGAAGTAATTATGCCCTTTAAACTAATAT
GCCCAATTGAAAAGGTTGGAACTTTCAACGAACTCCACAGATTCTTGAGT
GATGATGGAATGCTCATAAACAGAGGACATACACCAAGCTTTTCTTGGAA
CACAACAAGTTCTTTCAGTCTGCTTGTAGAAGAACCATCAGATATTACTG
CAAAAGACAGGATTCAAATGGCCTTGGGATGATGGCAGAATCATTATTAT
CTTGATGATAGCTATCATTTTATTATGTGTTTTAATGTGTCAGACATTGA
ACTATATACATAGCAGCTGATTTAATTCTCAAGACTATATACTGACAAAC
TATGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTATTCAGATAACATATAAATGAGAGCAGGA
TCACGAGATAGATGCATTTTTAAGGAAGAAACAATATATGCTGTATACCA
GAGAAAACAAGAAAGAGAAAAAGCCATCCTACTATGGAATGACATTGGTA
AAAATTTAACTAAGGCATAAACAGTTTATATAATAAAGATGTTATTGATC
TACCTGATAGTTGAAAGAAAGGAAGGCCCACTAAAAAGTTATTCCAAGAA
TGCAAGGATGGTTTACTATCAAAAAAAAAAGGAAAAAAAACCTTTTCTAT
GGAATATTTTAATTTGTTAATAGTTTTTAATGTCTTCTGGAAATGAGCTT
ACCCTGTACATAGAGGGCATCATTTTCCTCTGACCCTGATTCCATCCCGT
TACACACTCTACTTCTGTGCTGTTTTCCTTTCTTTAAAAATTATGTTTTA
CACACCTACCCTTTCCTCTTAGCTGTTTTGTTATATTAAGAAACTTCTCT
TCTTGTTTCACAGTTACTATCTTCTCTTACATGTGTGTGCACATGTGCAC
GCACACCCTTAAATCTTATTCATTTTATTCTTTTGATCTGTCATATATTC
TCCATTGCAGTTTTGTAAAGGGGCCCATGAAAGTCACAGGAACCTTGGGG
CCTCTTCTAAATTCTTACAGTAGAAATATGTGCAACAGAAACAGAGACGT
TTCAGTAGCATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_g21.b1 MSMg01no519_g21.b1 CHROMAT_FILE:
MSMg01no519_g21.b1 PHD_FILE: MSMg01no519_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:08 2005
         (642 letters)



>mm_chr15_69276722_69277764
          Length = 1043

 Score = 1094 bits (566), Expect = 0.0
 Identities = 599/610 (98%), Gaps = 1/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  atatatataaaatttgtagtcttttcctcttgt-gttcaagccattcttttcctccagat 90
           ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 841 atatatatataatttgtagtcttttcctcttgtggttcaagccactcttttcctccagat 782

                                                                       
Query: 91  gcataaagacaatgaagtgggcatcaattctcctggtcctctagcttgctgagtcaggct 150
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct: 781 gcataaagacaatgaagtgggcatcaattctcctggtcctgtagcttgctgagtcttgct 722

                                                                       
Query: 151 actcctagtgcatgcggccaatagtcttctacaaaagtagacgagaacacagcaggaatc 210
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 721 actcctggtgcatgcggccaatagtcttctacaaaagtagacaagaacacagcaggaatc 662

                                                                       
Query: 211 aaacctggaagtcaaagtctcagaattcatttgttgggtgtcatttaatatatagtcaaa 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaacctggaagtcaaagtctcagaattcatttgttgggtgtcatttaatatatagtcaaa 602

                                                                       
Query: 271 tctcagctgatcagaaggtctggataagcaagaatattgagctagaagtactccatggag 330
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 601 tctcagctgatcagaaagtctggacaagcaagaatattgagctagaagtactccatggag 542

                                                                       
Query: 331 tgagtattgattatacccttaatggcactgcagagtattgactgagaattcaattagaag 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgagtattgattatacccttaatggcactgcagagtattgactgagaattcaattagaag 482

                                                                       
Query: 391 taattatgccctttaaactaatatgcccaattgaaaaggttggaactttcaacgaactcc 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taattatgccctttaaactaatatgcccaattgaaaaggttggaactttcaacgaactcc 422

                                                                       
Query: 451 acagattcttgagtgatgatggaatgctcataaacagaggacatacaccaagcttttctt 510
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 acagattcttgagtgatgatggaatgctcataaacagagaacatacaccaagcttttctt 362

                                                                       
Query: 511 ggaacacaacaagttctttcagtctgcttgtagaagaaccatcagatattactgcaaaag 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaacacaacaagttctttcagtctgcttgtagaagaaccatcagatattactgcaaaag 302

                                                                       
Query: 571 acaggattcaaatggccttgggatgatggcagaatcattattatcttgatgatagctatc 630
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaggattcaaatggccttgggatgatggcagaatcattattatcttgatgatagctatc 242

                     
Query: 631 attttattat 640
           ||||||||||
Sbjct: 241 attttattat 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no519_g21.g1 MSMg01no519_g21.g1 CHROMAT_FILE:
MSMg01no519_g21.g1 PHD_FILE: MSMg01no519_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:08 2005
         (458 letters)



>mm_chr15_69174801_69175654
          Length = 854

 Score =  832 bits (430), Expect = 0.0
 Identities = 450/458 (98%), Gaps = 4/458 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actattcagataacatataaatgagagcaggatcacgagatagatgcatttttaaggaag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 actattcagataacatataaatgagagcaggatcacgagataaatgcatttttaaggaag 260

                                                                       
Query: 61  aaacaatatatgctgtataccagagaaaacaagaaagagaaaaagccatcctactatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaatatatgctgtataccagagaaaacaagaaagagaaaaagccatcctactatgga 320

                                                                       
Query: 121 atgacattggtaaaaatttaactaaggcataaacagtttatataataaagatgttattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacattggtaaaaatttaactaaggcataaacagtttatataataaagatgttattga 380

                                                                       
Query: 181 tctacctgatagttgaaagaaaggaaggcccactaaaaagttattccaagaatgcaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tctacctgatagttgaaagaaaggaaggcccactaaaaagttattccaagaatgcaaaga 440

                                                                       
Query: 241 tggtttactatcaaaaaaaaaaggaaaaaaaaccttttctatggaatattttaatttgtt 300
           |||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tggtttactatcaaaaaaa---ggaaaaaaa-ccttttctatggaatattttaatttgtt 496

                                                                       
Query: 301 aatagtttttaatgtcttctggaaatgagcttaccctgtacatagagggcatcattttcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 aatagtttttaatgtcttctggaaatgagcttaccctgtacatagaggtcatcattttcc 556

                                                                       
Query: 361 tctgaccctgattccatcccgttacacactctacttctgtgctgttttcctttctttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 tctgaccctgattccatcccgttacacactctacttctgtgctcttttcctttctttaaa 616

                                                 
Query: 421 aattatgttttacacacctaccctttcctcttagctgt 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aattatgttttacacacctaccctttcctcttagctgt 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 854
Length adjustment: 10
Effective length of query: 448
Effective length of database: 844
Effective search space:   378112
Effective search space used:   378112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)