BAC Information

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BAC

Clone NameMSMg01-520H20
Chromosome15 (Build37)
Map Location 74,464,310 - 74,616,967
singlet/doubletdoublet
Overlap gene1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik
Upstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1
Downstream geneLy6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520H20.T7 (MSMg01no520_h20.b1)MSMg01-520H20.TJ (MSMg01no520_h20.g1)
ACCAG591509AG591510
length757755
length of high quality
(start - end)		708 (50 - 757)677 (79 - 755)
definitionCHROMAT_FILE: MSMg01no520_h20.b1 PHD_FILE: MSMg01no520_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:33 2005CHROMAT_FILE: MSMg01no520_h20.g1 PHD_FILE: MSMg01no520_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,464,310 - 74,465,013)(74,616,284 - 74,616,967)
sequence
NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCCATCATCTAGAACTCTTAGTAGTTCTGCCCATCAAAC
TAGAGCAGAGGGTTGCCCTCAGGCCTTGAAAAGGGTCCAGGGATGTTGAA
CCTCTCTCTTTTGCAAACTAGACCTTTACAATTTTTTCATGGAAGCCACA
AAAGCCATTTTTAAGTGACTGTCCCCGAGCCTGGGGTAGATAGAAGTGGA
GGGGAACAGGGGACTAGAAGGCTGCATGGAGGACATGGGACAAGACACGG
AGACTAAAGTAAGGGTCGGACAGTGACCCAAGGTGAGGGGGCCACTGAGG
GCAAAGGGGGGTCAAGTATGGCTACAGATGGCAGATAGGTCTATAACAAG
AGGCTTGCAGAGAATAGAGGAGACACTGCTATCTCTTCTACCCACCCTCC
CCCCTCCTGCTCCTTGCTTGTGCTAGCTTCTCCCATGCAAACTCTTTTTC
CTCTCCAACCTAATCCAATCAGCTTGCACCTAGCTGGGCTACCCAAGGAA
CCTAGAGACCAGCTTTTCAGATCCTTCTGTGTGTCCAGGGATTCTCAACT
CCTCTCTCTCTCTCAACCCTCTAATCCTCAACCCCACAGACCCCCAGAGA
ACCTGCACAGCTTCTGCAACCTGGTTCACTCAGCCACAGCTCCTTGCCAA
GTCTCTTGTGGTCAGCCACAGTCCCATCAGTCTCCAGGAAGCCACGACCC
TCTTTAG

NNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGGGAGGTGGGAGGCTGTG
AGAAAGAGGTTGGTAGGGCCATGATGCAGGCTGGTGGGTACAAGAGAGAG
GACCCTGGAGTGTGGGGGAGGGGATCTGAGATGTTGGACCCCTGAGGTTC
TCGCCAGTTGTCCACAGATAGTAGCATGGAAGTCATCTGCTGAAAGTTGG
GGGTGCTATTGTTTGGAAACAGATACTCCCCACAAAGGCTCATGTGTTAA
AGGCTTGGTCTCCAGCTAGTAGTAGGTGAATTAGATCATGAGGATGATAG
CTTCATCAATGATTAATCTGCTGATATGTTCTGCTAGGAAGTCCTAGAGG
GAGCAGGGCACTGACGGTACGACTTTGAGGACCCTCTTTGTGTATGTCTC
CCTACTTTCCTTGTCTCCACGAGATGAGTGGCTTTCACCCACCATACCTT
TCCACCATGATTTTATCTTGCCACAGAGCTGAACAGTGTCCAAACATCCT
GAAATTCTGAGCCAAAATAAATCTTGGCTCTCCTGAGTTTTGAGGTTTGT
TTTGGTTATTTTGTCACCGCTGTAGAAAATCAATGAACTTGGTGATTCAT
GGGCTGAGTCCACAGGGGCCGTGGCTGGGACATCTGTCCACTTCACTCTT
GAAGCTCGGAGCAGCCATGGTTGCCCAGTCAGACTCCTGGTAGCTAAACT
TTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_h20.b1 MSMg01no520_h20.b1 CHROMAT_FILE:
MSMg01no520_h20.b1 PHD_FILE: MSMg01no520_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:33 2005
         (708 letters)



>mm_chr15_74464106_74465213
          Length = 1108

 Score = 1353 bits (700), Expect = 0.0
 Identities = 703/704 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccatcatctagaactcttagtagttctgcccatcaaactagagcagagggt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccatcacctagaactcttagtagttctgcccatcaaactagagcagagggt 264

                                                                       
Query: 65  tgccctcaggccttgaaaagggtccagggatgttgaacctctctcttttgcaaactagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccctcaggccttgaaaagggtccagggatgttgaacctctctcttttgcaaactagac 324

                                                                       
Query: 125 ctttacaattttttcatggaagccacaaaagccatttttaagtgactgtccccgagcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttacaattttttcatggaagccacaaaagccatttttaagtgactgtccccgagcctg 384

                                                                       
Query: 185 gggtagatagaagtggaggggaacaggggactagaaggctgcatggaggacatgggacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggtagatagaagtggaggggaacaggggactagaaggctgcatggaggacatgggacaa 444

                                                                       
Query: 245 gacacggagactaaagtaagggtcggacagtgacccaaggtgagggggccactgagggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacacggagactaaagtaagggtcggacagtgacccaaggtgagggggccactgagggca 504

                                                                       
Query: 305 aaggggggtcaagtatggctacagatggcagataggtctataacaagaggcttgcagaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggggggtcaagtatggctacagatggcagataggtctataacaagaggcttgcagaga 564

                                                                       
Query: 365 atagaggagacactgctatctcttctacccaccctcccccctcctgctccttgcttgtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagaggagacactgctatctcttctacccaccctcccccctcctgctccttgcttgtgc 624

                                                                       
Query: 425 tagcttctcccatgcaaactctttttcctctccaacctaatccaatcagcttgcacctag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagcttctcccatgcaaactctttttcctctccaacctaatccaatcagcttgcacctag 684

                                                                       
Query: 485 ctgggctacccaaggaacctagagaccagcttttcagatccttctgtgtgtccagggatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgggctacccaaggaacctagagaccagcttttcagatccttctgtgtgtccagggatt 744

                                                                       
Query: 545 ctcaactcctctctctctctcaaccctctaatcctcaaccccacagacccccagagaacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcaactcctctctctctctcaaccctctaatcctcaaccccacagacccccagagaacc 804

                                                                       
Query: 605 tgcacagcttctgcaacctggttcactcagccacagctccttgccaagtctcttgtggtc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgcacagcttctgcaacctggttcactcagccacagctccttgccaagtctcttgtggtc 864

                                                       
Query: 665 agccacagtcccatcagtctccaggaagccacgaccctctttag 708
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 agccacagtcccatcagtctccaggaagccacgaccctctttag 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no520_h20.g1 MSMg01no520_h20.g1 CHROMAT_FILE:
MSMg01no520_h20.g1 PHD_FILE: MSMg01no520_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:33 2005
         (677 letters)



>mm_chr15_74616055_74617131
          Length = 1077

 Score = 1292 bits (668), Expect = 0.0
 Identities = 677/684 (98%), Gaps = 7/684 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgggaggtgggaggctgtgagaaagaggttggtagggccatgatgcaggctggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ttgtgggaggtgggaggctgtgagaaagaggttggtagggccatgatgcaggctggtggg 854

                                                                       
Query: 61  tacaagagagaggaccctggagtgtgggggaggggatctgagatgttggacccctgaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tacaagagagaggaccctggagtgtgggggaggggatctgagatgttggacccctgaggt 794

                                                                       
Query: 121 tctcgccagttgtccacagatagtagcatggaagtcatctgctgaaagttgggggtgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tctcgccagttgtccacagatagtagcatggaagtcatctgctgaaagttgggggtgcta 734

                                                                       
Query: 181 ttgtttggaaacagatactccccacaaaggctcatgtgttaaaggcttggtctccagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttgtttggaaacagatactccccacaaaggctcatgtgttaaaggcttggtctccagcta 674

                                                                       
Query: 241 gtagtaggtgaattagatcatgaggatgatagcttcatcaatgattaatctgctgatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtagtaggtgaattagatcatgaggatgatagcttcatcaatgattaatctgctgatatg 614

                                                                       
Query: 301 ttctgctaggaagtcctagagggagcagggcactgacggtacgactttgaggaccctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttctgctaggaagtcctagagggagcagggcactgacggtacgactttgaggaccctctt 554

                                                                       
Query: 361 tgtgtatgtctccctactttccttgtctccacgagatgagtggctttcacccaccatacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtgtatgtctccctactttccttgtctccacgagatgagtggctttcacccaccatacc 494

                                                                       
Query: 421 tttccaccatgattttatcttgccacagagctgaacagtgtccaaacatcctgaaattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttccaccatgattttatcttgccacagagctgaacagtgtccaaacatcctgaaattct 434

                                                                       
Query: 481 gagccaaaataaatcttggctctcctgagttttgaggtttgttttggttattttgtcacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagccaaaataaatcttggctctcctgagttttgaggtttgttttggttattttgtcacc 374

                                                                       
Query: 541 gctgtagaaaatcaatga-------acttggtgattcatgggctgagtccacaggggccg 593
           ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 373 gctgtagaaaatcaatgaacacatcacttggtgattcatgggctgagtccacaggggccg 314

                                                                       
Query: 594 tggctgggacatctgtccacttcactcttgaagctcggagcagccatggttgcccagtca 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggctgggacatctgtccacttcactcttgaagctcggagcagccatggttgcccagtca 254

                                   
Query: 654 gactcctggtagctaaactttgca 677
           ||||||||||||||||||||||||
Sbjct: 253 gactcctggtagctaaactttgca 230


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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