BAC Information

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BAC

Clone NameMSMg01-521B01
Chromosome15 (Build37)
Map Location 59,247,263 - 59,420,052
singlet/doubletdoublet
Overlap geneNsmce2
Upstream geneD15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik
Downstream geneTrib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521B01.T7 (MSMg01no521_b01.b1)MSMg01-521B01.TJ (MSMg01no521_b01.g1)
ACCAG591947AG591948
length736730
length of high quality
(start - end)		686 (51 - 736)640 (85 - 724)
definitionCHROMAT_FILE: MSMg01no521_b01.b1 PHD_FILE: MSMg01no521_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:17 2005CHROMAT_FILE: MSMg01no521_b01.g1 PHD_FILE: MSMg01no521_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,247,263 - 59,247,556)(59,419,413 - 59,420,052)
sequence
NNNNNNTCCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGACAAGCGCCTCTGGTGGATCTCTTTTTTCTTCTCTA
GTCTGTCCTGGCCACTTTTTATTAATAAAGTTTAAAGCTTGAAGAAGGAT
CTCTGCTGGCCATTTGTGACTCACGGGCAGCCTCAGTTAAGGCTCCAGAG
CTCAGAGAATGTCTGGAGGAGCTGAGAAACACAGTGAAGACCAGCATAGC
CTGAGCAGGAGGAAACAGTAGAAGGAAGAATCATGGAGCACGCAGTAAGA
TTGCTGCTGTCTCTTGATGTGCTGCAGAAGGGGCCAGAGACCAGAACTTC
ATAGTTTTGCAGCTCATTTTGGTTTTTTTGTCTTTTTTTTGTTTGTTTGT
TTTTTAATCATTCATTCTCTTGTAATAACAATGCAGTGGATTTGTGTGTG
TGTGTGTGTGTGTGTCAGATGCCACAGCCTAGGAAAGCCATTGGAATTTG
TCTCATTCTCGAAGAACAGCGGTGAGGAAAGAAGAGCAGGATGTCACATG
AAAGAGGCAAATACCCAGAAATTGCTCTCAGACGCCTGGAAAGCTCTGGG
AAGGGAGGGACAGACAAATAGACAAAGTTGATGTTGAAGGGCTTTTGAAG
AAAAGTACAGTACTTTACAAGTTAGCCTTTGGATGATAGAGTTTGAACTT
TTTCCAGATGTGGCATCTGAAGTAGAAGACAATAAT

NNAAAANCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGGAAAATCTGTTA
GACGTATTAACAGAGTTCAGCCCACGTGAAAGACTGTGGGTTTGTTGGTC
TTTTTCTATTTTTAAATTTCAAAAGGTGGAGGAAGCAAGAAAGCATAACT
CAGATGCAATGCCAACCGCTAGGGAGGCCGAGCAGGGAACTAAGAGATGG
CAGAGATCACGAACAGGGAGGTAACGAGAGAGAAGGGTGAATGCCAGCCG
TGAGTAATAGCCCACAGACCGAGAGAGTCTAAAAGAGGAAAGATTGCAAT
AGCGACACTTCTCTAAAGAGAGCATTTCCTCACCCTCCACCTGTATTTAT
AGAAAGTGACATTAATGCTGGGATTCTACAAGGTGCTCACAAAAGGTCGC
ATCTGGCAATAAATATCACTTCTGGTGGTTTACCTGGTCTCCAGGACAGA
ACTGCATGGTACGTGTGGTAAAAGGCAGGCGGGAGAGAAAGGCACAGATC
TGCCAGAACCACAGACATTTGGAGAGTGGGGTTAGCTGCCAACCAAAGTC
TTACTTATCCCAGAACATCAAGAGCCAGACAAAGCATAGCTTGTGCTTAA
AACTGTCCAGGGTGCATGTCATTCTACGTTCTCCCGATGCATCCTCTGAG
CACTGTGAACAGTGTGCTGCTTCTAGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_b01.b1 MSMg01no521_b01.b1 CHROMAT_FILE:
MSMg01no521_b01.b1 PHD_FILE: MSMg01no521_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:17 2005
         (686 letters)



>mm_chr15_59246671_59247756
          Length = 1086

 Score =  545 bits (282), Expect = e-159
 Identities = 291/294 (98%)
 Strand = Plus / Plus

                                                                       
Query: 393 tgtgtgtgtgtgtgtgtgtgtgtcagatgccacagcctaggaaagccattggaatttgtc 452
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 593 tgtgtgtgtgtgtgtgtgtgtgtcagatgccacggcctaggaaagccattggaatttgtc 652

                                                                       
Query: 453 tcattctcgaagaacagcggtgaggaaagaagagcaggatgtcacatgaaagaggcaaat 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tcattctcgaagaacagcggtgaggaaagaagagcaggatgtcacatgaaagaggcaaat 712

                                                                       
Query: 513 acccagaaattgctctcagacgcctggaaagctctgggaagggagggacagacaaataga 572
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gcccagaaattgctctcagacgcctggaaagctctgggaagggagggacagacaaataga 772

                                                                       
Query: 573 caaagttgatgttgaagggcttttgaagaaaagtacagtactttacaagttagcctttgg 632
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caaagttgatgttgaagggcttttgaagaaaagtacagtactttacaagttagcctttgg 832

                                                                 
Query: 633 atgatagagtttgaactttttccagatgtggcatctgaagtagaagacaataat 686
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 atgatagtgtttgaactttttccagatgtggcatctgaagtagaagacaataat 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_b01.g1 MSMg01no521_b01.g1 CHROMAT_FILE:
MSMg01no521_b01.g1 PHD_FILE: MSMg01no521_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:17 2005
         (640 letters)



>mm_chr15_59419213_59420252
          Length = 1040

 Score = 1230 bits (636), Expect = 0.0
 Identities = 639/640 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accggaaaatctgttagacgtattaacagagttcagcccacgtgaaagactgtgggtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 accggaaaatctgttagacgtattaacagagttcagcccacgtgaaagactgtgggtttg 781

                                                                       
Query: 61  ttggtctttttctatttttaaatttcaaaaggtggaggaagcaagaaagcataactcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttggtctttttctatttttaaatttcaaaaggtggaggaagcaagaaagcataactcaga 721

                                                                       
Query: 121 tgcaatgccaaccgctagggaggccgagcagggaactaagagatggcagagatcacgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgcaatgccaaccgctagggaggccgagcagggaactaagagatggcagagatcacgaac 661

                                                                       
Query: 181 agggaggtaacgagagagaagggtgaatgccagccgtgagtaatagcccacagaccgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agggaggtaacgagagagaagggtgaatgccagccgtgagtaatagcccacagaccgaga 601

                                                                       
Query: 241 gagtctaaaagaggaaagattgcaatagcgacacttctctaaagagagcatttcctcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagtctaaaagaggaaagattgcaatagcgacacttctctaaagagagcatttcctcacc 541

                                                                       
Query: 301 ctccacctgtatttatagaaagtgacattaatgctgggattctacaaggtgctcacaaaa 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttcacctgtatttatagaaagtgacattaatgctgggattctacaaggtgctcacaaaa 481

                                                                       
Query: 361 ggtcgcatctggcaataaatatcacttctggtggtttacctggtctccaggacagaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggtcgcatctggcaataaatatcacttctggtggtttacctggtctccaggacagaactg 421

                                                                       
Query: 421 catggtacgtgtggtaaaaggcaggcgggagagaaaggcacagatctgccagaaccacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 catggtacgtgtggtaaaaggcaggcgggagagaaaggcacagatctgccagaaccacag 361

                                                                       
Query: 481 acatttggagagtggggttagctgccaaccaaagtcttacttatcccagaacatcaagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acatttggagagtggggttagctgccaaccaaagtcttacttatcccagaacatcaagag 301

                                                                       
Query: 541 ccagacaaagcatagcttgtgcttaaaactgtccagggtgcatgtcattctacgttctcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccagacaaagcatagcttgtgcttaaaactgtccagggtgcatgtcattctacgttctcc 241

                                                   
Query: 601 cgatgcatcctctgagcactgtgaacagtgtgctgcttct 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cgatgcatcctctgagcactgtgaacagtgtgctgcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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