BAC Information

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BAC

Clone NameMSMg01-522L16
Chromosome15 (Build37)
Map Location 21,084,914 - 21,273,357
singlet/doubletdoublet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522L16.T7 (MSMg01no522_l16.b1)MSMg01-522L16.TJ (MSMg01no522_l16.g1)
ACCAG593218AG593219
length760752
length of high quality
(start - end)		583 (53 - 635)583 (84 - 666)
definitionCHROMAT_FILE: MSMg01no522_l16.b1 PHD_FILE: MSMg01no522_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:25 2005CHROMAT_FILE: MSMg01no522_l16.g1 PHD_FILE: MSMg01no522_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,084,914 - 21,085,492)(21,272,775 - 21,273,357)
sequence
NNNTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTATTCAGTGACCTTGATAGGTCATTTCAGTTATATT
TAGTGAATGACAGCTCCAAAGATTTGATGTGCCTATGTGCATGCTCCTTC
CACTTCTTCAAGTATTCATAGGTCCGAGGAGCTGTGAGAAAATATTATCA
CTGTATGATACTCTTGCTCTGTCAGAACACCTACAAAATTACTCTTCGCT
GACACATAATGAGCTCCCCTTTATGGCCAGGTTCAATCTTCCTTCCTGTG
TAACAGGTAAAGGACAGAGAGAAATTGCTCAAGATGCAAATTATCTGGAC
TCTTGTGACCCAAGTGAACCAGACCTTACAAAGTGCCTGTCAGGGAGATG
TAAATTTCTCATAAGCAGCTAGATCATTCCACTCAAAGGAGAGTATTGAT
TTCCCTGCAGCATCTCCAATGCAGAGGTGAAAGACTTACAAGTTTGTTGA
TGTAGCTGCTTTCTAGATTTTCCTTTATTAATCCATGTCTCTTTAACCTG
TCAGTTCTAAAGTTCATAAGCCATAAAGTGATATTGTCGAAACATACCAT
CTTTCTTCATATTAAAAAACAGTGTGATAAAGAAAACAGATACATTCTAG
GGTCACTATGGTAAAATGCCCACACCCTGGTATCCCATTACTGTGTAATC
AATACACATTAACATAGACTGCATTATACATATGNTAAGGACACTTGACA
TCTCAGTAAN

NTTTTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCATTTATGCTTAC
TTCCTATAATGGCATCATAAATATTTTCTAATAGGCAACCGATTTGCATG
ATAATTTGTACATTACACATTCATTTTTGTCCGAATCATCAGAAACTGGG
TAATGTTGAGGTAAAATTGACCTGTATTAATGAGCAGTAGTTTTCGCAAC
TACTTTGTATAAGAACCGTAGTAAGTTGAGTATTGTCTCTAAATACAGGT
TAGCTGAAGGGATTTTTCTAACACTTTCATTATAAACATATTAAAGAAGA
AATCAGTCTTAGTGTTTCCTTATTTCCCACGAGGCTTAATAAGACTCCCA
AGAAACCTTCAAAGGCTCATAGTTCTACTTTTACTTTAATATGGAAAAAA
TAGAGAAACAGGCCAAAAATAAACCTTTCACTGATTCTGTAGTGGACTTT
GTTGCCTTTAGCAAATGTGGAACACCTTTATGAAAAATAGTATTTTTCAG
CTACTGTTTCCAAGCATATGAGATGATCATTAACTTCAAACGCAAGGCTA
TGAAAACATATGAAAACAAACATATGAAAACAACTTGACTGAGAAGGCAT
CTTTTATCATTTTATTGCCTTTGAAAAATAATTTCTTTAGTGTTAATGTT
TAGTGTTAATGTTTAGTGTTTAGTGTTTATGTTAATGTTTAGTGTTAATG
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_l16.b1 MSMg01no522_l16.b1 CHROMAT_FILE:
MSMg01no522_l16.b1 PHD_FILE: MSMg01no522_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:25 2005
         (583 letters)



>mm_chr15_21084710_21085692
          Length = 983

 Score = 1104 bits (571), Expect = 0.0
 Identities = 577/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattattcagtgaccttgataggtcatttcagttatatttagtgaatgacagctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattattcagtgaccttgataggtcatttcagttatatttagtgaatgacagctc 264

                                                                       
Query: 65  caaagatttgatgtgcctatgtgcatgctccttccacttcttcaagtattcataggtccg 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 caaagatttgatgtgcctatgtgcatgctccttccatttcttcaagtattcataggtccg 324

                                                                       
Query: 125 aggagctgtgagaaaatattatcactgtatgatactcttgctctgtcagaacacctacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagctgtgagaaaatattatcactgtatgatactcttgctctgtcagaacacctacaa 384

                                                                       
Query: 185 aattactcttcgctgacacataatgagctcccctttatggccaggttcaatcttccttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattactcttcgctgacacataatgagctcccctttatggccaggttcaatcttccttcc 444

                                                                       
Query: 245 tgtgtaacaggtaaaggacagagagaaattgctcaagatgcaaattatctggactcttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtaacaggtaaaggacagagagaaattgctcaagatgcaaattatctggactcttgt 504

                                                                       
Query: 305 gacccaagtgaaccagaccttacaaagtgcctgtcagggagatgtaaatttctcataagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacccaagtgaaccagaccttacaaagtgcctgtcagggagatgtaaatttctcataagc 564

                                                                       
Query: 365 agctagatcattccactcaaaggagagtattgatttccctgcagcatctccaatgcagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agctagatcattccactcaaaggagagtattgatttccctgcagcatctccaatgcagag 624

                                                                       
Query: 425 gtgaaagacttacaagtttgttgatgtagctgctttctagattttcctttattaatccat 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 gtgaaagacttacaagtttgttgatgtatctgctttctagattttcctttattaatccat 684

                                                                       
Query: 485 gtctctttaacctgtcagttctaaagttcataagccataaagtgatattgtcgaaacata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtctctttaacctgtcagttctaaagttcataagccataaagtgatattgtcgaaacata 744

                                                  
Query: 545 ccatctttcttcatattaaaaaacagtgtgataaagaaa 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccatctttcttcatattaaaaaacagtgtgataaagaaa 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_l16.g1 MSMg01no522_l16.g1 CHROMAT_FILE:
MSMg01no522_l16.g1 PHD_FILE: MSMg01no522_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:25 2005
         (583 letters)



>mm_chr15_21272575_21273557
          Length = 983

 Score = 1096 bits (567), Expect = 0.0
 Identities = 579/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcatttatgcttacttcctataatggcatcataaatattttctaataggcaaccgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aactcatttatgcttacttcctataatggcatcataaatattttctaataggcaaccgat 724

                                                                       
Query: 61  ttgcatgataatttgtacattacacattcatttttgtccgaatcatcagaaactgggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttgcatgataatttgtacattacacattcatttttgtccgaatcatcagaaactgggtaa 664

                                                                       
Query: 121 tgttgaggtaaaattgacctgtattaatgagcagtagttttcgcaactactttgtataag 180
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgttgggggaaaattgacctgtattaatgagcagtagttttcgcaactactttgtataag 604

                                                                       
Query: 181 aaccgtagtaagttgagtattgtctctaaatacaggttagctgaagggatttttctaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaccgtagtaagttgagtattgtctctaaatacaggttagctgaagggatttttctaaca 544

                                                                       
Query: 241 ctttcattataaacatattaaagaagaaatcagtcttagtgtttccttatttcccacgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctttcattataaacatattaaagaagaaatcagtcttagtgtttccttatttcccacgag 484

                                                                       
Query: 301 gcttaataagactcccaagaaaccttcaaaggctcatagttctacttttactttaatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcttaataagactcccaagaaaccttcaaaggctcatagttctacttttactttaatatg 424

                                                                       
Query: 361 gaaaaaatagagaaacaggccaaaaataaacctttcactgattctgtagtggactttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaaaaaatagagaaacaggccaaaaataaacctttcactgattctgtagtggactttgtt 364

                                                                       
Query: 421 gcctttagcaaatgtggaacacctttatgaaaaatagtatttttcagctactgtttccaa 480
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 363 gcctttagcaaatgtggaacacctgaatgaaaaatagtatttttcagctactgtttccaa 304

                                                                       
Query: 481 gcatatgagatgatcattaacttcaaacgcaaggctatgaaaacatatgaaaacaaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcatatgagatgatcattaacttcaaacgcaaggctatgaaaacatatgaaaacaaacat 244

                                                      
Query: 541 atgaaaacaacttgactgagaaggcatcttttatcattttatt 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgaaaacaacttgactgagaaggcatcttttatcattttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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