BAC Information

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BAC

Clone NameMSMg01-523D10
Chromosome15 (Build37)
Map Location 40,523,959 - 40,524,295
singlet/doubletsinglet
Overlap geneZfpm2
Upstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872, Ppia-ps25
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523D10.T7 (MSMg01no523_d10.b1)MSMg01-523D10.TJ (MSMg01no523_d10.g1)
ACCAG593587AG593588
length779841
length of high quality
(start - end)
337 (141 - 477)---
definitionCHROMAT_FILE: MSMg01no523_d10.b1 PHD_FILE: MSMg01no523_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:03 2005CHROMAT_FILE: MSMg01no523_d10.g1 PHD_FILE: MSMg01no523_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
GCGGAATTCATTTTTCCCATGAAATTTATCAATTCTACCATCTTCAGAAA
TATTACTTTATCAAGGATGAGGTGAGGGCTGGATGATCATGGAAATGAGC
CATGGTTGGCGCCTTATTATTATCCAGAACAGTGTATTACACCACCAGCA
GCATGCTTGACCTTTGAAATGAGAGAGTATTATAGAAACATTAAGAAATT
TAGCTTAAGGTAAAAGTGTAGAAGAGACAGATTTCATGAACATTGTCAAG
ATGCAACCATGAGAGATAGAAACTAATGTGTAAAATTTGAACAGGAGTGA
TGTGATCAAACAATAACCTCAGGGACTGTACTAAAATGATTCTATTGTAT
AATGATTATTTTCTGGGCCATGGTTGGATCTAGAGATGGAAAAAGACCTA
GCAGTTATGGGGGAAATTTGTCCTAGGAGATCTAGGCATCAGAAAGAAAT
TGAAGAGCCCTCTTTAAGGTTGTCTTCCTTCCTTCCTTCCTTTCCTTCCT
TCCTTCCTTACATACTTCCTTCCTTCCGTCCTTCGCCCCGTTATTAATTA
CCTTTCATCCCGGTCCTCACGAACTACTTGTTTTTTTTATCTATTCATCC
TTTGTCAACCCTCATTGCTAATTTGCTTCACACCCATCGTTTTGTATCCT
CTCCTATTCTCTTTTATATTACCTTTTATCATACATACTGTTATTTGTAC
TTCACACCTTAACACCCTCCCGCTCTTTN
CTCTTCGTTTACATTCCCGCGCCAAATTTTTTATTATTCACTCCTTTCTT
CTAACCCTATTTTCTACTTTTTCTCTTTAATCCTATTATATGTCTATTTC
CCCTCTTCTTTTTCCCCCTTTTCCTCCCCTCCTCTTGTATCTTCTTTCAA
TCCGCCGTCCCCCCTAAAATTGCCACCTAAGCTGGGGGGGGGTTTAAAGG
GGTTCCCCCGGTGGGGGGTGGGGGTCCCGGACCCCCCTTGTTTTTTTTCC
CTCACATCCGAAAAAACAATTTTTTTTAAAGGGGTTTGCAAAACCAACCT
TAATTTTAAGGGAAAATGTTTTGTCAAATCCCCCCCGGACCGGGGGGGAA
AAAAATTTTTTTCCCGCCCTTTTTAAAAATTTTGGGGTTTTTTTGGGTTT
TTAAAAAATTAAATTTAATTTCCCCCCAAAAACCCTTTCCCAAAAAACCC
CAACCCATTTTGGGAAAAAAGGTAAAACCCTTTTAAATTTTTTTTTTTTT
AAAAATTTTTCCCCGGGGCCCCAATAAAGGGGGAATAAAGTGGAAAAAAA
AACCCTACCCCCTTTTTGTTGGGTTTTTGGGGGGGGAAACAACTTTGGGG
GGTTTATAAAAACCCCTATTTTTTAACCCCCTTAAACCCCCAAGGGAGAA
AAAATTTAAAAATTTTAAAGGGGGGGGGGAAAATTGGGCGGGGTGGTTTA
AAGGAAAAAAAAAAATTCCCCCGCGTGAAAAAATATTTTTTTAAACACCC
CCTTTTTTATTTTAAAAAGAGGGCCCCCTTTCTCCCCCCTTTGGGGGGGG
TTTTTTTTCCCCCATCCAAATATATTACCTCACCTCTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_d10.b1 MSMg01no523_d10.b1 CHROMAT_FILE:
MSMg01no523_d10.b1 PHD_FILE: MSMg01no523_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:03 2005
         (337 letters)



>mm_chr15_40523759_40524495
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaatgagccatggttggcgccttattattatccagaacagtgtattacaccaccagca 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaatgagccatggttggcgccttagtattatccagaacagtgtattacaccaccagca 260

                                                                       
Query: 61  gcatgcttgacctttgaaatgagagagtattatagaaacattaagaaatttagcttaagg 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgcttgagctttgaaatgagagagtattatagaaacattaagaaatttagcttaagg 320

                                                                       
Query: 121 taaaagtgtagaagagacagatttcatgaacattgtcaagatgcaaccatgagagataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaagtgtagaagagacagatttcatgaacattgtcaagatgcaaccatgagagataga 380

                                                                       
Query: 181 aactaatgtgtaaaatttgaacaggagtgatgtgatcaaacaataacctcagggactgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaatgtgtaaaatttgaacaggagtgatgtgatcaaacaataacctcagggactgta 440

                                                                       
Query: 241 ctaaaatgattctattgtataatgattattttctgggccatggttggatctagagatgga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaaacgattctattgtataatgattattttctgggccatggttggatctagagatgga 500

                                                
Query: 301 aaaagacctagcagttatgggggaaatttgtcctagg 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagacctagcagttatgggggaaatttgtcctagg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)