BAC Information

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BAC

Clone NameMSMg01-523G05
Chromosome15 (Build37)
Map Location 34,626,024 - 34,626,597
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
Downstream geneKcns2, Stk3, Osr2, Vps13b, EG666183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523G05.T7 (MSMg01no523_g05.b1)MSMg01-523G05.TJ (MSMg01no523_g05.g1)
ACCAG593719AG593720
length747745
length of high quality
(start - end)
459 (135 - 593)574 (79 - 652)
definitionCHROMAT_FILE: MSMg01no523_g05.b1 PHD_FILE: MSMg01no523_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:17 2005CHROMAT_FILE: MSMg01no523_g05.g1 PHD_FILE: MSMg01no523_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACATTCTCATCTCAAATGTCTAAAAAGCACTTAAAGAA
ATGTTCAACATCCTTATTCATCAGAGAAATGCATATCAAAATGACCCTGA
GATTCTACCTTATACCAATCAGAATGGCTAAGACCAAAAACTCAAGAAGT
GAGAAAGGGGAAACACTCAAGTGGAGAAAGGGGAACACTCCATTGCTGGT
AGGGTTGTAAACTTGTAAAACCACTCTGGAACTCAATCTGGCACTTTCTC
AAAAAAATTGCAAGCACTTCTACCCATATACCCAGCTATACCACTCTAAG
GCATATACCCAAAAGATACCTCACCATACCACAAGGACACATACTTCACT
ATGTTCATAGCATCTTTATACATAATAGCTAGAAACTGGAAGCAACCAGA
TGTCCATCATTTGAAGAATGGACACAGAAAATGCGGTTCATTTACACAAT
AGATTGCTACTCAGCTATTAAAAACAAGGACATCATGAATTTTGCAGACA
AATGGATGTATCTAGAAAATATATCATCCTGAGTGAGGTAACCCAGACCC
AAAAGGACTGGTATGGTAGGCACTCCCTAAAGTACATCATACCTGTGATA
TACCCCACAGACCCTAAGAATTTAAACCAGTAGGAAGGCCCATTTGATGA
TGCTTGAATCATGATTACTTGAGGGAACAAAATAGTCACAGGAGGCG
AGTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGTATGAGAGGGAGAAACC
AGATGATGGACTCAGTCTATAAGCATCTTTACATTGGAAAGACATTTTAG
AAATAAAAGAGGGCGAGACAGGAAGCTTGGTGGAAGCAATGGGGGCTAAT
ATCTAAAATGACTTGGGGATTAAAAAGAAAAGAAGTAAGAATGTGTTTAA
GGCAGAGATCTGTGGATGCAGTACTAGTTCAGCTGGAAACTCTGAGTTTC
TATGAACTGTTGAAAATGGTACAGGTTGATTGGTTCCACAAGGAAATGGA
ATGTGTGTTGTTTGCAGCAAGAGTTCTAGATGGAATAATAGAGTGGACTT
CTATGTCTGCTTTAAAAACTTAGCAGGTCCCTTCTCTGAGCTGGCAATAG
ACAACCACTTGGAAGGGGGAAATATGAATAATTAGACATAATTAGGCTGT
CAGCTCATACATCATTATGCTCTGCCTCTTCAGGATGTTTTGTAGATTAA
TTAGTTAATGTTTGTAAAATAAGCGCCAAGTGCCATGTGTCATTGACACA
GAATTTGATTTTCAATGTGATGAATGTAATTAACTTTATATAAACTTTCA
CTGCAGAGTAGTGTCTGTTCTGGAAGGTCCTAGGAGTGGGCATTGAGGTT
CATAAACTGGCATTTTATCAAGATAAACTTTTTTTTTAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_g05.g1 MSMg01no523_g05.g1 CHROMAT_FILE:
MSMg01no523_g05.g1 PHD_FILE: MSMg01no523_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:17 2005
         (574 letters)



>mm_chr15_34625824_34626797
          Length = 974

 Score = 1094 bits (566), Expect = 0.0
 Identities = 572/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtatgagagggagaaaccagatgatggactcagtctataagcatctttacattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtatgagagggagaaaccagatgatggactcagtctataagcatctttacattgga 260

                                                                       
Query: 61  aagacattttagaaataaaagagggcgagacaggaagcttggtggaagcaatgggggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacattttagaaataaaagagggcgagacaggaagcttggtggaagcaatgggggcta 320

                                                                       
Query: 121 atatctaaaatgacttggggattaaaaagaaaagaagtaagaatgtgtttaaggcagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatctaaaatgacttggggattaaaaagaaaagaagtaagaatgtgtttaaggcagaga 380

                                                                       
Query: 181 tctgtggatgcagtactagttcagctggaaactctgagtttctatgaactgttgaaaatg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtggatgcagtacgagttcagctggaaactctgagtttctatgaactgttgaaaatg 440

                                                                       
Query: 241 gtacaggttgattggttccacaaggaaatggaatgtgtgttgtttgcagcaagagttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacaggttgattggttccacaaggaaatggaatgtgtgttgtttgcagcaagagttcta 500

                                                                       
Query: 301 gatggaataatagagtggacttctatgtctgctttaaaaacttagcaggtcccttctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatggaataatagagtggacttctatgtctgctttaaaaacttagcaggtcccttctctg 560

                                                                       
Query: 361 agctggcaatagacaaccacttggaagggggaaatatgaataattagacataattaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctggcaatagacaaccacttggaagggggaaatatgaataattagacataattaggct 620

                                                                       
Query: 421 gtcagctcatacatcattatgctctgcctcttcaggatgttttgtagattaattagttaa 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gtcagctcatacatcattatgctctgcctcttcgggatgttttgtagattaattagttaa 680

                                                                       
Query: 481 tgtttgtaaaataagcgccaagtgccatgtgtcattgacacagaatttgattttcaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttgtaaaataagcgccaagtgccatgtgtcattgacacagaatttgattttcaatgt 740

                                             
Query: 541 gatgaatgtaattaactttatataaactttcact 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgaatgtaattaactttatataaactttcact 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)