BAC Information

Click to search

BAC

Clone NameMSMg01-524I02
Chromosome15 (Build37)15 (Build37)
Map Location 19,972,939 - 19,973,61620,016,884 - 20,017,432
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666857, EG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524I02.T7 (MSMg01no524_i02.b1)MSMg01-524I02.TJ (MSMg01no524_i02.g1)
ACCAG594567AG594568
length755749
length of high quality
(start - end)		682 (38 - 719)633 (68 - 700)
definitionCHROMAT_FILE: MSMg01no524_i02.b1 PHD_FILE: MSMg01no524_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:48 2005CHROMAT_FILE: MSMg01no524_i02.g1 PHD_FILE: MSMg01no524_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:48 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,972,939 - 19,973,616)(20,016,884 - 20,017,432)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
CCTCCTCCTGCATCATGCATACCAGTATGCTGCCATGTTCCTACCTTGAT
GATAATGGACTGAACCTCTGAATCTGTAAGCCAGACTCAAATAAATGTTG
TTCTTATAAGAATTGTCTTAGTCATGGTTTCTGTTAACAGTAGTATAACT
CTTAATGAAGATGATAACGTCTTAAAGTCATTACATATCAAATGACTCAC
CAGACTAAATAAGATGCTAGTATTTAAGTCCTTCATGTGTGCTCACATGC
TAGTCATATACTGAAAACTAAGAAAATGTGTCTCCATATTTCCCACAGTT
TCCTTGCAATTACTTTGGTAATAAGAACTAAATTTTCCCTTTGTGTTCAC
TATTTTAACTAGGTCTGCCTGTTGGGAGATAAAATCCATTAAACATATCA
ACAGGAGCCTATATCAAATGATGACTGATATAAACAAAGAGGTAACAGAA
TTGTACAATCAAAAAATTAAGAACGTAAATTATTGTAAGTTTTATGAATA
TTTATTATAAACAAGTTTTTCTGGTTTAAAATTCTATGATAAAGATTTGT
GTTGCAAGTTGTATTAATTGTACTGTGGAAATTTAATTACAATAAGTGAA
AGGTACTAGTCAAAGCTCCTATCAGAAGTTGTGACTAAATCAGTAGAAAT
GGGATATTAACTTGAATATTTTCCCATTAGAATGTTTCAAATTATATATA
TATAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCCTGACTCCATGTGGCTATCTTTACATAC
ACACCATTCTCTGATACCTTCAAGCACTTGTTAGGCTGCTGCAAATGCTT
TCTAATATCTCTAATTTTGTGCAAGATCACTGTACTTTTCTGCTTTATCA
GTGAACGGTTGGCATACTCTGCAATTAACATTTGGCCATTTTCACGTGCA
TTAGCATAATTTTTTCACCTCTGATCTTTTCTAGTTGCTCAAAATATCTT
ATGGACAGATCTAGACAGACTTTTGCATAATCCTTTAAATTATCAGGTGT
AATTGTGAACAAAAAAATGAGTTCTGGCTCATTCTTCATTTTGGACTCCT
AAATTCCTTAAGAGACTTTAAAAGTATTTCATCTCACTTTTCTGAGGATG
TACTTCATGATTGTCAATAACAGTCACCCTGCTGTGTGCTAGCACATCAA
ACCTCATGATTTTATTTATTTCAATTTCGAATATCTTTGTCAAATATTTT
CAGTTTTGTACTCTTACTTGTCTCTTAGAACGATGTTTGAAAATGCCATT
CATGATAATAAGCACCAGGCACTTTTCTTTCTGTATCTGAACTCTTTCAC
ACAGTACAGTGATCTCTCATAATGGATATAAATATTTTCAAAAAACTCAG
ATGTTTTGTGGAGTTGTATTTTCAGTTTTTCTGTTCCATAATAATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_i02.b1 MSMg01no524_i02.b1 CHROMAT_FILE:
MSMg01no524_i02.b1 PHD_FILE: MSMg01no524_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:48 2005
         (682 letters)



>mm_chr15_19972562_19973643
          Length = 1082

 Score = 1164 bits (602), Expect = 0.0
 Identities = 659/678 (97%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcttacctcctcctgcatcatgcataccagtatgctgccatgttcctaccttgatg 64
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1055 gaattcttacctcatcctgcatcatgcataccaggatgctgccatgttcctaccttgatg 996

                                                                        
Query: 65   ataatggactgaacctctgaatctgtaagccagactcaaataaatgttgttcttataaga 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  ataatggactgaacctctgaatctgtaagccagactcaaataaatgttgttcttataaga 936

                                                                        
Query: 125  attgtcttagtcatggtttctgttaacagtagtataactcttaatgaagatgataacgtc 184
             ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 935  gttgccttagtcatggtttctgttaacagtagtataactcttaatgaagatgctaacatc 876

                                                                        
Query: 185  ttaaagtcattacatatcaaatgactcaccagactaaataagatgctagtatttaagtcc 244
            |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 875  ttaaagtcattacatatcaaatgactcatcagactaaataagatggtagcatttaagtcc 816

                                                                        
Query: 245  ttcatgtgtgctcacatgctagtcatatactgaaaactaagaaaatgtgtctccatattt 304
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 815  ttcatgtgtgctcacatgctagtcatatactgaaaactaagaaaatttgtctccatattt 756

                                                                        
Query: 305  cccacagtttccttgcaattactttggtaataagaactaaattttccctttgtgttcact 364
            ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 755  cccacagtttccttgcaattactttggtaatgagaactaatttttccctttgtgttcact 696

                                                                        
Query: 365  attttaactaggtctgcctgttgggagataaaatccattaaacatatcaacaggagccta 424
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 695  attttaactaggtctgcctgttgagagataaaatccattaaacatatcaacaggagccta 636

                                                                        
Query: 425  tatcaaatgatgactgatataaacaaagaggtaacagaattgtacaatcaaaaaattaag 484
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 635  tatcaaatgatgactgatataaacaaagaggtaacagaattgtaaaatcaaaaaattaag 576

                                                                        
Query: 485  aacgtaaattattgtaagttttatgaatatttattataaacaagtttttctggtttaaaa 544
            || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575  aaagtaaataattgtaagttttatgaatatttattataaacaagtttttctggtttaaaa 516

                                                                        
Query: 545  ttctatgataaagatttgtgttgcaagttgtattaattgtactgtggaaatttaattaca 604
            |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515  ttctatgataaagacttgtgttgcaagttatattaattgtactgtggaaatttaattaca 456

                                                                        
Query: 605  ataagtgaaaggtactagtcaaagctcctatcagaagttgtgactaaatcagtagaaatg 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  ataagtgaaaggtactagtcaaagctcctatcagaagttgtgactaaatcagtagaaatg 396

                              
Query: 665  ggatattaacttgaatat 682
            |||||||||||| |||||
Sbjct: 395  ggatattaacttaaatat 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_i02.g1 MSMg01no524_i02.g1 CHROMAT_FILE:
MSMg01no524_i02.g1 PHD_FILE: MSMg01no524_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:48 2005
         (633 letters)



>mm_chr15_20016884_20017916
          Length = 1033

 Score = 1054 bits (545), Expect = 0.0
 Identities = 548/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcctgactccatgtggctatctttacatacacaccattctctgataccttcaagcac 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttttcccgactccatgtggctatctttacatacacaccattctctgataccttcaagcac 490

                                                                       
Query: 61  ttgttaggctgctgcaaatgctttctaatatctctaattttgtgcaagatcactgtactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttgttaggctgctgcaaatgctttctaatatctctaattttgtgcaagatcactgtactt 430

                                                                       
Query: 121 ttctgctttatcagtgaacggttggcatactctgcaattaacatttggccattttcacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttctgctttatcagtgaacggttggcatactctgcaattaacatttggccattttcacgt 370

                                                                       
Query: 181 gcattagcataattttttcacctctgatcttttctagttgctcaaaatatcttatggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcattagcataattttttcacctctgatcttttctagttgctcaaaatatcttatggaca 310

                                                                       
Query: 241 gatctagacagacttttgcataatcctttaaattatcaggtgtaattgtgaacaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gatctagacagacttttgcataatcctttaaattatcaggtgtaattgtgaacaaaaaaa 250

                                                                       
Query: 301 tgagttctggctcattcttcattttggactcctaaattccttaagagactttaaaagtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgagttctggctcattcttcattttggactcctaaattccttaagagactttaaaagtat 190

                                                                       
Query: 361 ttcatctcacttttctgaggatgtacttcatgattgtcaataacagtcaccctgctgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcatctcacttttctgaggatgtacttcatgattgtcaataacagtcaccctgctgtgt 130

                                                                       
Query: 421 gctagcacatcaaacctcatgattttatttatttcaatttcgaatatctttgtcaaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gctagcacatcaaacctcatgattttatttatttcaatttcgaatatctttgtcaaatat 70

                                                                       
Query: 481 tttcagttttgtactcttacttgtctcttagaacgatgtttgaaaatgccattcatgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  tttcagttttgtactcttacttgtctcttagaacgatgtttgaaaatgccattcatgata 10

                    
Query: 541 ataagcacc 549
           |||||||||
Sbjct: 9   ataagcacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |