BAC Information

Click to search

BAC

Clone NameMSMg01-524J07
Chromosome15 (Build37)
Map Location 27,518,619 - 27,519,217
singlet/doubletsinglet
Overlap geneAnk
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneBC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5, EG382974, LOC100040675
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524J07.T7 (MSMg01no524_j07.b1)MSMg01-524J07.TJ (MSMg01no524_j07.g1)
ACCAG594623AG594624
length780772
length of high quality
(start - end)
681 (16 - 696)594 (64 - 657)
definitionCHROMAT_FILE: MSMg01no524_j07.b1 PHD_FILE: MSMg01no524_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:54 2005CHROMAT_FILE: MSMg01no524_j07.g1 PHD_FILE: MSMg01no524_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAATCGACTCACTATAGGTTCAGGATCCGCGGAATTCAAGGCCC
ATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCA
AAGTAAATGGTGAGAAGCTGAAGCAATTCCACTAAATTCAGGGACTAGAC
AAGGCTGCCCACTTTCTCCCTACCTATTCAACATTGTACTTGAAGTCCTA
GCCAGAGCAATTCGACAACAAAAGGAGATCAAGGAGATACAAATTGGAAA
GGAAGAAGTCAAAATGTCACTTTTTGCAGATGATATGATAGTATATATAA
GTGACCCTAAAAATTTCACCAGAGAACTCCTAAGCCTGATAAATAGCTTC
AGTGAAGTAGCTGGATGTAAAATTAACTCAAACAAGTCAATGGCCTTTCT
GTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGAGAAACAACACCCT
TCTCAATAGTCACAAATAATATAAAATAGCTTGGAGTGACTCTAACTAAG
GAAGTGAAAGATCTATATGATAAGAACTTCAAGTCTCTGAAGAAAGAAAT
TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATAGATTGGCA
GGATCAATATAGTAAAAATAGCTATCTTGTCAAAAGCAATCTACAGATTC
AATGCAACCCCCATCAAAATTCCAACTCAGTTCTTCAACGAACTAGAAAT
GGCAATCTGCNAATTCATCTGGAAACACAAAAAACCTAGGATAGCAAAAA
CTCTTCTCAAGGATAAAAGACCTCTGGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGAAAGTCTTGGGCTCCCAAAGAAGCTGCCTAAGCA
GTAAGAGTCATACAAGTGACAGAGCTCAGACAGATTAGCTGTGCTAATGT
TCACAGCTCTACTTATAAACGTGAATACACAATCAGTGGTCCCCAGACTT
CCACAACAGCTTTAAGGTCGAAACAAAAGGAACTAAAGACAATGCAGAAA
GAAGGAAAAATAAAAACCCTTTCTATCATGCTGACATTCTCAGATGGGTG
AAGAAACTGTATTCATGGATCAGGAACAGAATAGAAATGTTCTAGAGACA
TGCATGGAACACGAGCGAGCCAGGGGTTAGGAGGATGAAGCTACATCTGA
GAAAGACATTGGCTGACACGGAGTCAGAAGTCAGCCACAGGACAGAGCTG
ACAACGATACAATGAGACTAGATCGTTTTTCTTTTGATCAAATAAATCTA
ATATTCTGATACTAACAGTTCCAAAAAGAGGGAACAGTGACCCTTTCAGA
GCTGAAAGAGGAATTTCAAGACTGAAAGGCTACCTTTAAGAGGACAGTGG
ATGGATGAGAAGAGACCCAGCAGGGCACATCATCAGTAGTACTGGGGGCA
GAGCTGGGAAAGCCCTCCAAGAGCAGTTGTCAAGGCAAGTGGATTTCTCC
CCTAGCATTCGCTATCAAACTGTCACGGGGTGACATTTAGGAGAAAGACC
TTTTCACTACTCAAGGCCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_j07.g1 MSMg01no524_j07.g1 CHROMAT_FILE:
MSMg01no524_j07.g1 PHD_FILE: MSMg01no524_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:54 2005
         (594 letters)



>mm_chr15_27518419_27519417
          Length = 999

 Score = 1093 bits (565), Expect = 0.0
 Identities = 589/599 (98%), Gaps = 5/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaagtcttgggctcccaaagaagctgcctaagcagtaagagtcatacaagtgacaga 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 799 ctgaaagtcttgggctcccaaagaagccgcctaagcagtaagagtcatacaagtgacaga 740

                                                                       
Query: 61  gctcagacagattagctgtgctaatgttcacagctctacttataaacgtgaatacacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctcagacagattagctgtgctaatgttcacagctctacttataaacgtgaatacacaat 680

                                                                       
Query: 121 cagtggtccccagacttccacaacagctttaaggtcgaaacaaaaggaactaaagacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cagtggtccccagacttccacaacagctttaaggtcgaaacaaaaggaactaaagacaat 620

                                                                       
Query: 181 gcagaaagaaggaaaaataaaaaccctttctatcatgctgacattctcagatgggtgaag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 619 gcagaaagaaggaaaaataaaaaacctttctatcatgctgacattctcagatgggcgaag 560

                                                                       
Query: 241 aaactgtattcatggatcaggaacagaatagaaatgttctagagacatgcatggaaca-- 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 559 aaactgtattcatggatcaggaacagaatagaaatgttctagagacatgcatggaacacg 500

                                                                       
Query: 299 --cgagcgagccaggggttaggaggatgaagctacatctgagaaagacattggctgacac 356
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcgagcgagccaggggttaggaggatgaagctacatctgagaaagacattggctgacac 440

                                                                       
Query: 357 ggagtcagaagtcagccacaggacagagctgacaacgatacaatgagactagatcgtttt 416
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 439 ggagtcagaagtcagccacaggacagagctgacaacgatagagtgagactagatcgtttt 380

                                                                       
Query: 417 tcttttgatcaaataaatctaatattctgatactaacagttccaaaaagagggaacagtg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcttttgatcaaataaatctaatattctgatactaacagttccaaaaagagggaacagtg 320

                                                                       
Query: 477 accctttcagagctgaaagaggaatttcaagactgaaaggctacctttaagaggacagtg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 accctttcagagctgaaagaggaatttcaagactgaaaggctacctttaagaggacagtg 260

                                                                      
Query: 537 gatggatgagaagagacccagcagggcacatcatcagtagtact-gggggcagagctgg 594
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 gatggatgagaagagacccagcagggcacatcatcagtagtactggggggcagagctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 999
Length adjustment: 10
Effective length of query: 584
Effective length of database: 989
Effective search space:   577576
Effective search space used:   577576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)