BAC Information

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BAC

Clone NameMSMg01-525B15
Chromosome15 (Build37)
Map Location 21,656,107 - 21,656,481
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351, EG545091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525B15.T7 (MSMg01no525_b15.b1)MSMg01-525B15.TJ (MSMg01no525_b15.g1)
ACCAG595020AG595021
length740749
length of high quality
(start - end)
656 (34 - 689)668 (66 - 733)
definitionCHROMAT_FILE: MSMg01no525_b15.b1 PHD_FILE: MSMg01no525_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:35 2005CHROMAT_FILE: MSMg01no525_b15.g1 PHD_FILE: MSMg01no525_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTATA
TTCTTTAAACTTAACAAAAATAGTTCTCTCTTTAATATAATTCTGTCTAA
ATTGTCTATTGTTTAAACATGATCAGCAATGATCTGGTGAAATAATTTGG
TTTTTATTATTCACCTAAATTATTTTTTCATCATTCCATATTATGTCTAG
CATATTAGGTGTGCTGATGTCTATGGCTCATGTTCTTCAAAGGGCATCCA
ACATCACTGGTTTGAACGGCAACCTTAGACCATGTTGATATCCGGGGCCA
GTGATGATGCCAGTGTCCAATAAATCTCAGTGACTTGTGCTACCACCTGA
AGCCATCATAACATTGAGGTCCATTCTGCCACCAGGATCCATGTCCAGAT
CATTTGTTGTATTGTAGCCAAGGTGTGCATTGGGGTCCATGGTACGTTTT
ACCACCAAAGGTCATATGGATACCCCTGGTCTGAGCTGCTTCCTGAGGCA
ATGTTGATGTCTAAGTATTATGCTGAGCTAGCCCATCTCTTTTGGTTGGG
GATTTGGCTTGACCCCTTGCCAGTCACCACACTTGGAAGAGTTGGCCTTA
CTCCTTGCCTGTGCAGTATAAGAGAGCTAGGTATGATAGTGAAGATATAG
AAGAACTGGCCCTGACACTCATTTGCAGCACTCCAGAGCACTGGCTGTTC
CAATCTTCTACACTTGGCATTGGATGGAAGACATACCTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAAAGCAATCTAC
AGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTTCCTTTTTCT
AGGACATGGTTTCCATCCTTGTGTTTGTTTGTTTGTTTTGTTTTGTTTTT
TTCTGTTATTATCCTTTGAAGGGCTGGATTCGTGGAAAGGTAATGTGTGA
ATTTGGTTTTGTTGTGGAATACGTTGGTTTCTCCATCTATGGTAATTGAA
AGTTTGGCTGGGTATAGTAGCCTGCGCTGGCATTTGTGTTCTCTTAGTGT
CTGTATAACATCTGTCCAGCATCTTCTGGCTTTCATAGTCTCTGATAAAA
GCCTGGTGTAATTCTGATAGGCCTGCCTTTATATGTTACTTGACCTTTTC
CCCTTACTGCTTTTAATATTTTATCTTTATTTAGTGCTTTTGTTGTTCTG
ATTATTATGTTTAGGGATGAATTTCTTTTCTGGTCCAGCCTATTTGGAGT
TCTGTAGGCTTCTTGTATGTTTATGGTCATCTCTTTCTTTAGGTTTGGGA
AGTTTTCTTCTATAATTTTGTTGAAGATATTTGCTGGCCCTTTAAGTTGA
AAATCTTCATTCTCAGCTACTCCCTTTATACGTAGGTTTGGTCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_b15.b1 MSMg01no525_b15.b1 CHROMAT_FILE:
MSMg01no525_b15.b1 PHD_FILE: MSMg01no525_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:35 2005
         (656 letters)



>mm_chr15_21655429_21656481
          Length = 1053

 Score =  661 bits (342), Expect = 0.0
 Identities = 368/378 (97%), Gaps = 3/378 (0%)
 Strand = Plus / Minus

                                                                        
Query: 279  agtgtccaataaatctcagtgacttgtgctaccacctgaagccatcataacattgaggtc 338
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1053 agtgtccaataaatctcagtgacttgtgctaccacctgaagccatcatgacattgaggtc 994

                                                                        
Query: 339  cattctgccaccaggatccatgtccagatcatttgttgtattgtagccaaggtgtgcatt 398
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 993  cattctgccaccaggatccatgtccagatcatttgttctattgtagccaaggtgtgcatt 934

                                                                        
Query: 399  ggggtccatggtacgttttaccaccaaaggtcatatggatacccctggtctgagctgctt 458
            |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 933  ggggtccatggtacattttaccaccaaaggtcatatggatacccctggtctgggctgctt 874

                                                                        
Query: 459  cctgaggcaatgttgatgtctaagtattatgctgagctagcccatctcttttggttgggg 518
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 873  cctgaggcaatgttgatgtctaagtattatgctgagctagcccatctcttttggttggag 814

                                                                        
Query: 519  atttggcttgaccccttgccagtcaccacacttggaagagttggccttactccttgcctg 578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  atttggcttgaccccttgccagtcaccacacttggaagagttggccttactccttgcctg 754

                                                                        
Query: 579  tgcagtataagagagctaggtatgatagtgaagatatagaagaactggccctgacactca 638
            |||||||||||||||||||||||||||||||||||||   |||||||||  |||||||||
Sbjct: 753  tgcagtataagagagctaggtatgatagtgaagatat---agaactggctatgacactca 697

                              
Query: 639  tttgcagcactccagagc 656
            ||||||||||||||||||
Sbjct: 696  tttgcagcactccagagc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1053
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1043
Effective search space:   673778
Effective search space used:   673778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)