BAC Information

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BAC

Clone NameMSMg01-525C10
Chromosome15 (Build37)
Map Location 28,083,853 - 28,084,182
singlet/doubletsinglet
Overlap genenone
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525C10.T7 (MSMg01no525_c10.b1)MSMg01-525C10.TJ (MSMg01no525_c10.g1)
ACCAG595058AG595059
length723737
length of high quality
(start - end)
228 (85 - 312)331 (71 - 401)
definitionCHROMAT_FILE: MSMg01no525_c10.b1 PHD_FILE: MSMg01no525_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:39 2005CHROMAT_FILE: MSMg01no525_c10.g1 PHD_FILE: MSMg01no525_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTATATTAGCTAAAAGACTCTTTTTTCCCTAGAGGAGCCGCGGAAT
TCACGCTTTTGCATCCTTCTCAACAGTCTGTTTTACGGGAACACTTTATT
ACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTC
TCAACAGTCTGTTTTATGGGAACCTTTATGACCGTGACCCGCAGTTCTGG
TTCCGGAATGAGGGATCTTCCTTGTGCCGGTGATGGTAAATTCCGTCCTG
GGGTTTTCTCGTCCCAGGATTTCTCGTCCCTGGTTTTCTCGTCCCAGGTC
TTCTCGTCCCGGGTCTCATCACCAACTCTTACACGCGTTCTCGCGACCGG
CCAGGAAGAACACAGCTAACCAGAATCTTCTGCGGCAAAACTTTATTGCT
TACATCTTCAGGAGCTAGAGTGCAAGAGAGCAAGAGCTCTATTGCTTACA
TCTTTAGGAGCCAGAGCGCAAGAGCTTTATTGCTTACATCTTTCGGAGCC
ATAATCTAGAGTCATATTTTGTATAGTTAATGGCTAAACCCCGTCTCCTT
TAATGATAATTATTTCTCCGCCTATGACGTATTACTCCCTGATTGTGTGC
ATTCCTTCGGTTCTTTTATTCAGACATTTGTACAACATCTGGCTTTTAAT
ACTGCCCCCGTTCTTGCGCTTATTATGTTTACTACTTATAACACAGCTGT
CACCTCTCTCTTGTACTGGTAAA
TTAATGCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACGGGATCATCGAAAGGAATTAAAGTAGA
AGCATTTCAAATGAGCCAACACTCATCCGGGCCAGCGCTGTTCAATATGA
AGGGAACATGTTACATACACATGTGGGCTTGCATTTCCTTCTGAAAGTAA
AAAGTAAGTGAAATTAATGGTATGTTTCATTTATCCCATTAGATTGGTTC
AATGAAAGCCACATATTAAAAATAAAATTCCTAAGGTACCTTTCACTCTC
TCTGTTACTGAATCCATTATCTCTGACGTGTGTCTGATACTTATAGCTTG
GTTCTGATAGAACCTAGCGGGGAAACCCCCACTCAATTCCCAATTCGGCG
TGCACCCAAAATAAAAATCACTTAGGACCTTCTTGATGTAATTACATGAG
GTCGTTTAATTACGGAGCTCCGGACCGACTTGTTTCTCACACTTTAGATA
ACGGATATCGGCCACTAGGTTCGAAAGTTTGGCGCTTCTATGGTTTAAGG
TGCTTAGGGGTGTGGATATTCTCTTACTTTTTCACTACTGTTTTTTTCGA
CATATCATTTCATAATATATTTGTATGCTTTTTGTCCCCCACACTTTCCG
TTTTCATGTTCACTTACCTTGTCTTTTCCCCCCCCTTTTTCCCTTCACCC
CTTTTTCACCTTTTGCCCCCTACTTTTCCTTTGCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_c10.g1 MSMg01no525_c10.g1 CHROMAT_FILE:
MSMg01no525_c10.g1 PHD_FILE: MSMg01no525_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:39 2005
         (331 letters)



>mm_chr15_28083700_28084429
          Length = 730

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%), Gaps = 1/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgggatcatcgaaaggaattaaagtagaagcatttcaaatgagccaacactcatccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cacgggatcatcgaaaggaattaaagtagaagcatttcaaatgagccaacactcatccgg 424

                                                                       
Query: 61  gccagcgctgttcaatatgaagggaacatgttacatacacatgtgggcttgcatttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gccagcgctgttcaatatgaagggaacatgttacatacacatgtgggcttgcatttcctt 364

                                                                       
Query: 121 ctgaaagtaaaaagtaagtgaaattaatggtatgtttcatttatcccattagattggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctgaaagtaaaaagtaagtgaaattaatggtatgtttcatttatcccattagattggttc 304

                                                                       
Query: 181 aatgaaagccacatattaaaaataaaattcctaaggtacctttcactctctctgttactg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 aatgaaagccacatattaaaaataaaattcctaaggtacctttcactctctctgttacag 244

                                                                       
Query: 241 aatccattatctctgacgtgtgtctgatacttatagcttggttctgatagaacctagcgg 300
           ||||||  | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatccagaa-ctctgacgtgtgtttgatacttatagcttggttctgatagaacctagcgg 185

                                          
Query: 301 ggaaacccccactcaattcccaattcggcgt 331
           |||||||||||||||||||||||||||||||
Sbjct: 184 ggaaacccccactcaattcccaattcggcgt 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space:   232162
Effective search space used:   232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)