BAC Information

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BAC

Clone NameMSMg01-527C06
Chromosome15 (Build37)
Map Location 90,878,758 - 90,879,129
singlet/doubletsinglet
Overlap geneKif21a
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps
Downstream geneEG635871, Abcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527C06.T7 (MSMg01no527_c06.b1)MSMg01-527C06.TJ (MSMg01no527_c06.g1)
ACCAG596564AG596565
length737790
length of high quality
(start - end)		501 (53 - 553)168 (81 - 248)
definitionCHROMAT_FILE: MSMg01no527_c06.b1 PHD_FILE: MSMg01no527_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:17 2005CHROMAT_FILE: MSMg01no527_c06.g1 PHD_FILE: MSMg01no527_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGGGGTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCGTAATCTTCTGTCAGCGCCTTAGTCGAAAAATTGAAAG
TTACATAATGTAAGTGTTCCTATGGTTATTTTAGTGACAAATCTTGATTA
AGCCCAGAAGTGGCAGTTTTGCATGTCCTGGGTCTTTAATTGTCTTAAAG
CTGGGCAGTGGTGGCGCATGCCCTTAATCCCAGCACTTGGGAGGCAGTGG
CAGGCGGATATCTGAGTTCAAGACCAGTCTGGTCTACAGAGTGAGTTCCA
GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAACAAAA
CAAAACAAAACAAAACAAAACAAGAATAAAAAGAAATGGGAAGGTATTTT
GATTCCTTTATTTTGCAGATAATGGAATTACCATAGAATGGAGGTGACGG
TTTTATTAGGTCTGGCCCTTAATGGCCTTCCTGTCTTTGCCTTCCACGTC
CCTGGTCCTGATGCACACATGATTCATATTTTAAGGCCCAACGAAAGCTA
GTATGATGAATAGGAAGAACAGTCTCATCTAGCAATGGAAGATATAGTCC
AGGAATAACAGAAAAGGGGAATAAAAAATTTTCAATGTTTTACCACGGAA
GGGTGTTAAGAATCCTAAAAACCGTCTCATGTTTTTACATCAGGTTAAAA
AGCTTATTTCCTCATAATTCTGTGACTTTAAAGCTTT

AAAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTCTGTTTATTTTGAT
ATTTGGGATCTATCTGCTGAGGCCATAGATACCATCTCATTCATATATAT
ATATATATATATATATATATATGTGTGTGTGTGTATATATATATATATAT
ATATACACACACATATATATATATATATATATATATATATATATATATGA
GAGGTTATATATATGCTGAGGAGAGATATATCATATATATATATATACAG
AGAGAGAGATTGCGCGCGTGTTTTTATAGAGACACACATATATATAGACA
GAGGGGGGCGCGAGGGTCACACTATAGATTTTTTGAGGGGGGGGACACCC
TATATATATATATTTACCCCCCTTTTTTCGTTACCTGGTTTTTTTGTCCC
TCTTTTTTGTATATTTTATTTTTTTTTAAACTTACTATTCTTATTCACCC
TCTTACATTCTACTTTTTTTTCTTTTTCTTTCTATATTACAAATTTTCTT
CTTATTCTTTTACCAAAAATAAATATCCTCTCTATTTCTTTATTCCATCC
TTTCTTTTTTATTTTCTTTTTCCTTTTTTTCTTATTTTTAATCTTATTGT
TTGCCCCAGTTATATTATTTGATATTTATTGTTTTATTTTTTTATTTACT
CCCCCGCCATATTTTTCCTCCTTCTTTACATTTTTTTTTCCCCCGCCCTC
CGTTTCACTTCTACACTTTTTCCCCTCTTTAATCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_c06.b1 MSMg01no527_c06.b1 CHROMAT_FILE:
MSMg01no527_c06.b1 PHD_FILE: MSMg01no527_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:17 2005
         (501 letters)



>mm_chr15_90878229_90879129
          Length = 901

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%), Gaps = 1/373 (0%)
 Strand = Plus / Minus

                                                                       
Query: 129 ggtctttaattgtcttaaagctgggcagtggtggcgcatgcccttaatcccagcacttgg 188
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 901 ggtctttaattgtcttaaagctgggcagtggtggcacatgccc-taatcccagcacttgg 843

                                                                       
Query: 189 gaggcagtggcaggcggatatctgagttcaagaccagtctggtctacagagtgagttcca 248
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaggcagtggcaggcggatttctgagttcaagaccagtctggtctacagagtgagttcca 783

                                                                       
Query: 249 ggacagccagggctacacagagaaaccctgtctcgaaaaacaaaacaaaacaaaacaaaa 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggacagccagggctacacagagaaaccctgtctcgaaaaacaaaacaaaacaaaacaaaa 723

                                                                       
Query: 309 caaaacaaaacaagaataaaaagaaatgggaaggtattttgattcctttattttgcagat 368
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 722 caaaacaaaaaaagaataaaaagaaatgggaaggtattttgattcctttattctgcagat 663

                                                                       
Query: 369 aatggaattaccatagaatggaggtgacggttttattaggtctggcccttaatggccttc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aatggaattaccatagaatggaggtgacggttttattaggtctggcccttaatggccttc 603

                                                                       
Query: 429 ctgtctttgccttccacgtccctggtcctgatgcacacatgattcatattttaaggccca 488
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 602 ctgtctttgccttccacgtccctggtcctgatgcacacatgattcatattttaaggccaa 543

                        
Query: 489 acgaaagctagta 501
           |||||||||||||
Sbjct: 542 acgaaagctagta 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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