BAC Information

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BAC

Clone NameMSMg01-527H21
Chromosome15 (Build37)
Map Location 89,002,301 - 89,002,878
singlet/doubletsinglet
Overlap genePlxnb2
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11
Downstream geneLOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527H21.T7 (MSMg01no527_h21.b1)MSMg01-527H21.TJ (MSMg01no527_h21.g1)
ACCAG596834AG596835
length786770
length of high quality
(start - end)		519 (70 - 588)578 (79 - 656)
definitionCHROMAT_FILE: MSMg01no527_h21.b1 PHD_FILE: MSMg01no527_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:44 2005CHROMAT_FILE: MSMg01no527_h21.g1 PHD_FILE: MSMg01no527_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTTAAATCTCACTGTCAGCATTAAGAGGAGCTCAGACTTGGTGC
TGTGACAGTGGGACACTGATGGCGAGACTTCACGTAACAAAAGTGTGAAA
GGAGAGAGTGGAACTGAGAAGGCCACGGCAGAGGTGCTGTGCTCTACAGT
GTTTGCCTGCAGTGTTTCCCCGGCCCTAGCCATCAAGGTCTACAGAAGCT
ATGGTAGAAGGGAACCAAACTACATCTTAAACTGGAAACAGAACTTGACA
GTGATGTCCTTATGGTGCTGGTTTTCTTAATGGGCTATTAGAGAGGTTTG
CACCAAAGTTCCAGGAAGCCACTAAGTGTAAAGCAGGGTTAGATTTCCTG
GAAGAAGGAAGGCCTTGAGAAATCATTGCATGAAATAGTGAAGACTAATT
CCATAATGAAGAACTCAGTATGTCCAACAAGGAAAGCACACATAGAGCAG
AGCTGCCCCAAGCTGTAGACAGCAGAGCTAAAGGAGCAGGGATGCCAAGG
CTGTTGGAGCCCAAAATTAGTCCATCGTAAGATCTCAGATGCAAGACATA
GACTGCAGAGTTGGTGTTTACCTTACTGGGTTTCACTGTTGCTTGGCTGG
ATCTTTCTTTGCTGTGCCTCCATATCTCCCTTTTGATTAGGGATGTGTAC
TGAGTCCGTTGTATATTAAAAGTATGTAGCTTGATTTTTGTTTGGTGTTA
TTATAGAGGTCACACTCAAAAGGATGCCTGTATCTG

NTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAGAGAAGATCATAGAGGA
CGGGTGACTGTGGCCAGGATGCTGAGGATAAGGAGTTGCCCAGCCTTCTG
AAGTGGGTATTATTGTCATACCCAACATGCATATGGGAAAATGGCACAGA
GCAGCTTTGTAAATGACCCATGTAACTCTGCCAGAAAGAGGCAGGGCTGG
ATTTGAACCAGAGTGGTGTGCTCTTGAAGTAAATTTACTAGTAGCGAGTT
CTTGAAGACAAAGAACTCGAGACAGAGTTCTTTGTCTGGGCTGGGGTGGG
GGTCACTCCTAGGAGACAGAGATGGCTGGTTGGGAACATCAATCCAAGAT
GGTGGTGATCTAAAGGGTCTCGGCGACATTAGTTTCACATCTAAGAAGTG
TTAGCCCAGAGGATCCTGATAGAGAAGACAATAGCTGGCCAGTGGACCCC
GATTAGTCAGTGGAAGGTTCATCAGACCCTTCTGAAATATGTATGGCAAG
TTGCTTAGAGGAGGCCAGCCTCCTTTGGCTCTGCCTTCAGGAGACTCCCA
ATAGGGAACTGGGGCCTAGATGATCTGCTTTGAGAAGTCTGGAGCTGGAG
GAAGCTGAGGCCTCAGAAGAAGCTAGAGCAGCCCCCANGCACAGAGAGGT
TGCAAGTGGATTCTCAGGGGGCTGACACTGTCCTGTGGGTTGCCTGCTGT
GTCTGAAGAACAATCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_h21.g1 MSMg01no527_h21.g1 CHROMAT_FILE:
MSMg01no527_h21.g1 PHD_FILE: MSMg01no527_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:45 2005
         (578 letters)



>mm_chr15_89001909_89002886
          Length = 978

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctagagaagatcatagaggacgggtgactgtggccaggatgctgaggataaggagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 970 ccctagagaagatcatagaggacgggtgactgtggccaggatgctgaggataaagagtcg 911

                                                                       
Query: 61  cccagccttctgaagtgggtattattgtcatacccaacatgcatatgggaaaatggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 cccagccttctgaagtgggtattattgtcatacccaacatgcatatgggaaaatggcaca 851

                                                                       
Query: 121 gagcagctttgtaaatgacccatgtaactctgccagaaagaggcagggctggatttgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gagcagctttgtaaatgacccatgtaactctgccagaaagaggcagggctggatttgaac 791

                                                                       
Query: 181 cagagtggtgtgctcttgaagtaaatttactagtagcgagttcttgaagacaaagaactc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 790 cagagtggtgtgctcttgaagtaaatttactagtagcgagttcttgaagacaaacaactc 731

                                                                       
Query: 241 gagacagagttctttgtctgggctggggtgggggtcactcctaggagacagagatggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gagacagagttctttgtctgggctggggtgggggtcactcctaggagacagagatggctg 671

                                                                       
Query: 301 gttgggaacatcaatccaagatggtggtgatctaaagggtctcggcgacattagtttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gttgggaacatcaatccaagatggtggtgatctaaagggtctcggcgacattagtttcac 611

                                                                       
Query: 361 atctaagaagtgttagcccagaggatcctgatagagaagacaatagctggccagtggacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atctaagaagtgttagcccagaggatcctgatagagaagacaatagctggccagtggacc 551

                                                                       
Query: 421 ccgattagtcagtggaaggttcatcagacccttctgaaatatgtatggcaagttgcttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccgattagtcagtggaaggttcatcagacccttctgaaatatgtatggcaagttgcttag 491

                                                                       
Query: 481 aggaggccagcctcctttggctctgccttcaggagactcccaatagggaactggggccta 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 490 aggaggccagcctcctttggctctgccttcaggagactcccaaaagggaactggggccta 431

                                                 
Query: 541 gatgatctgctttgagaagtctggagctggaggaagct 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gatgatctgctttgagaagtctggagctggaggaagct 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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