Query= MSMg01no527_o11.b1 MSMg01no527_o11.b1 CHROMAT_FILE:
MSMg01no527_o11.b1 PHD_FILE: MSMg01no527_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:20 2005
(683 letters)
>mm_chr15_63290874_63291956
Length = 1083
Score = 967 bits (500), Expect = 0.0
Identities = 518/524 (98%)
Strand = Plus / Minus
Query: 160 taaagctagagtttattcttctggattccttattttataatgggtctttgaagctggggg 219
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 taaagctagagtttattattctggattccttattttataatgggtctttgaagctggggg 1024
Query: 220 ttatgccatatccaagttaataataaacttcattaacaacaaagtacttgattgtttcag 279
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1023 ttatgccatatccaagttaataataaacttcattaacaacaaagtacttgattatttcag 964
Query: 280 ttatatctatacacacatatgaatatctacatgtatacagatgtatgtaagaatacacac 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ttatatctatacacacatatgaatatctacatgtatacagatgtatgtaagaatacacac 904
Query: 340 atgtgcattcttatgtacattacagggaaagaacctacaagttggtgatcgggtcatttt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 atgtgcattcttatgtacattacagggaaagaacctacaagttggtgatcgggtcatttt 844
Query: 400 caattttcatgatttttcaaggtgcctgtgagtggttctccgtttactgatggtggagct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 caattttcatgatttttcaaggtgcctgtgagtggttctccgtttactgatggtggagct 784
Query: 460 agaaagccggaaatagcaatgatcttaattaaattttatagtttcctgaggatattcgtg 519
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 783 agaaagccggaaatagcaatgatcttaattaaattttaaagtttcctgaggatattcgtg 724
Query: 520 agagaataatcttccttgtgtttgactctaaactacttgcatgtcttacatgtaccaccg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agagaataatcttccttgtgtttgactctaaactacttgcatgtcttacatgtaccaccg 664
Query: 580 agagacgcttcttttggaacaagagcagatttcaaaaacaagctgtaagcctagagattt 639
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agagaggcttcttttggaacaagagcagatttcaaaaacaagctgtaagcctagagattt 604
Query: 640 cacattgttaggaaagactcagcatgaaaatttcttttctgtca 683
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 603 tacattgttaggagagactcagcatgaaaatttcttttctgtca 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_o11.g1 MSMg01no527_o11.g1 CHROMAT_FILE:
MSMg01no527_o11.g1 PHD_FILE: MSMg01no527_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:20 2005
(650 letters)
>mm_chr15_63209427_63210474
Length = 1048
Score = 986 bits (510), Expect = 0.0
Identities = 597/651 (91%), Gaps = 41/651 (6%)
Strand = Plus / Plus
Query: 1 tcacagtaactaccagtgattgagctt-aatgaagccttaatgaagaatgctgtagccaa 59
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 238 tcacagtaactaccagtgattgagcttgaa-gaggccttaatgaagaatgctgtagccaa 296
Query: 60 tctagaanatgtacacacacacacacacacacacacacacacacacacacacacacacac 119
||||||| ||||| |||||||||||
Sbjct: 297 tctagaaaatgtatacacacacaca----------------------------------- 321
Query: 120 accacgtttataaatgtagatatgaatgtagatatttactctacttagaaaatatttgga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 --cacgtttataaatgtagatatgaatgtagatatttactctacttagaaaatatttgga 379
Query: 180 tagtatctgaaagaaccaattatctaagaaaactaatgtacagttgaatcaagttggttg 239
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 tagtatctgaaagagccaattatctaagaaaactaatttacagttgaatcaagttggttg 439
Query: 240 aacttgtctttaacatggtgctgacaatgtttaagttctgacttcattcacaaagtagat 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agcttgtctttaacatggtgctgacaatgtttaagttctgacttcattcacaaagtagat 499
Query: 300 gatcttcaaagccagttgtttgaatctcaggctctctttctggtgttttgaaggaaagta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatcttcaaagccagttgtttgaatctcaggctctctttctggtgttttgaaggaaagta 559
Query: 360 cgttgtttagaaggaaaaaaaaaaggcaacttcatctgagtgttggttggtttggagaaa 419
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 560 tgttgtttaaaaggaaaaaaaaa--gcaatttcatctgagtgttggttggtttggagaaa 617
Query: 420 atgcttgattgagtttctggaaattataattaaaattgatcatagtaaatgaaaaacaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgcttgattgagtttctggaaattataattaaaattgatcatagtaaatgaaaaacaac 677
Query: 480 aaaaaatattttagagagcagattttctaatatcagctatcaaatgttatctgacaggag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaaatattttagagagcagattttctaatatcagctatcaaatgttatctgacaggag 737
Query: 540 cctgatataactgtctcctgagaagctctgccagagcctgacaaatatagggtcatccat 599
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 738 cctgatataactgtctcctgagaagctctgccagagcctgacaaatatagagccatccac 797
Query: 600 tggactgagcacaggggtcccaaatggaggcgttagaaaaaggagtgaagg 650
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 798 tggactgagcacaggggtcccaaatggaggcattagaaaaaggagtgaagg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1048
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1038
Effective search space: 664320
Effective search space used: 664320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
