BAC Information

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BAC

Clone NameMSMg01-528C01
Chromosome15 (Build37)
Map Location 103,482,883 - 103,483,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528C01.T7 (MSMg01no528_c01.b1)MSMg01-528C01.TJ (MSMg01no528_c01.g1)
ACCAG597317AG597318
length699745
length of high quality
(start - end)
401 (53 - 453)607 (79 - 685)
definitionCHROMAT_FILE: MSMg01no528_c01.b1 PHD_FILE: MSMg01no528_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:38 2005CHROMAT_FILE: MSMg01no528_c01.g1 PHD_FILE: MSMg01no528_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATATTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTAT
TTGATTTTCTGGAAGTCCACCTTCTTGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCACAATCTATTG
GTGGCCTTCTTGTCTTTTTGACGGTGTCTTTTGCTTTACAGAAGCTTTGA
AATTTTATGAGGTCCCATTTGTTGATCCTTGATCTTACAGCACAAGCCAT
TGCTGTTCTATTCAGGAATTTCCCCCTGTGCCCATATTTTTGAGGCTTTC
CCCCACTTTCTACTCTATAAGTTTACCTGTCTTGGTTTTATGTGGAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAA
TTCGAATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGAGTCTTCAATTCTATTCC
AATGGNCTACTTGTCTGGTGCTATACCAGNACCATGCAGGTTTTTTTTTT
TCTCACAATTGCTCTGTAGTACAACTTTTAGTCAAGCATGTTGATTCCC
CCCCAATGCTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCTTGTGCACTATACGAGT
GCAATGTTCACACCACAATTTCATATCTCTTTACCTCACCTTGACAGTGT
TCATCGACTAGAGTGACTGTGAGATTTAAATAAGTCTATGGATTCTATAA
CATGGTTCCTGACGTGTATTTATAATGCAAAATGATATAATTTATGATGG
CCTGATATTTAAGGGGAGAAAAAGAAGTCAAAATAGAAAAAAAATGTTCA
CTACTATCAAATAAAATAGCAAATTCCTAGAAATACCCTGAATAGCAAGA
AAAGCAGATTGCTCCAGAACTGCAAAACATTTCTACTCTTGGTATAATCC
AATAAAAGAAAAATATTCAGCCAAATATCAGAGATAAGCAGGTACCATGC
TACATGCAGTTTATACTTTCTACTGATTTTTATTAATTTTACAATTTATC
TTTAAAATATTCATACTATAAAAATAATGGCATTGAAATTGCTAAAGTAG
CAATGAAATTGCAATACTCTGCTTTCTCTCACGTTTGCTTATTAAGTTGA
TTTGGAAAAAGAACAAGAAATTTATAATGATATAAATGTGGACAAAACAA
GGGTATGTATGGATTCTCTCTCTCTCCTCAATCTGTAACACTGTTTTCTT
TCCCTCTCTCCTTTTCCTCTCTCTTATCACCTCCCTCCCACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_c01.g1 MSMg01no528_c01.g1 CHROMAT_FILE:
MSMg01no528_c01.g1 PHD_FILE: MSMg01no528_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:39 2005
         (607 letters)



>mm_chr15_103482525_103483525
          Length = 1001

 Score =  511 bits (264), Expect = e-149
 Identities = 403/452 (89%), Gaps = 15/452 (3%)
 Strand = Plus / Plus

                                                                       
Query: 159 ataatttat-gatggcctgatatttaaggggagaaaaagaagtcaaaatagaaaaaaaat 217
           ||||||||| || ||||||||||| ||||||| |||||    ||||||||||||||||  
Sbjct: 359 ataatttatgga-ggcctgatattaaagggga-aaaaa----tcaaaatagaaaaaaa-- 410

                                                                       
Query: 218 gttcactactatcaaataaaatagcaaattcctagaaataccctgaatagcaagaaaagc 277
           ||||| ||  |||||  ||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct: 411 gttcattaagatcaaggaaaatagcaaattcccagaaataccctgaataacaataaaagc 470

                                                                       
Query: 278 agattgctcca-gaactgcaaaacatttctactcttggtataatccaataaaag-aaaaa 335
           ||||||||||| ||| || |||||||||||||||||||||||||||||||| || |||||
Sbjct: 471 agattgctccaggaa-tgtaaaacatttctactcttggtataatccaataagagaaaaaa 529

                                                                       
Query: 336 tattcagccaaatatcagagataagcaggtaccatgctacatgcagtttatactttctac 395
            ||||||  |||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 530 aattcagttaaatatcagagataagcaggtaccatgctatatgcagtttatacttactac 589

                                                                       
Query: 396 tgatttttattaattttacaatttatctttaaaatattcatactataaaaataatggcat 455
           ||||||||||||| |||||||| ||||||| ||| | |||||||  |||||| |||||||
Sbjct: 590 tgatttttattaaatttacaatatatctttcaaacactcatactccaaaaatgatggcat 649

                                                                       
Query: 456 tgaaattgctaaagtagcaatgaaattgcaatactctg-ctttctctcacgtttgcttat 514
           |||||||||||| |||||||||||||||||||||| || ||| |||||| |||| |||||
Sbjct: 650 tgaaattgctaaggtagcaatgaaattgcaatactttggctt-ctctcatgtttacttat 708

                                                                       
Query: 515 taagttgatttggaaaaagaacaagaaatttataatgatataaatgtggacaaaacaagg 574
           ||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||| |
Sbjct: 709 taagttgatttggaaaaagaataagaaattaataatgataaaaatgtggacaagacaatg 768

                                           
Query: 575 gtatgtatggattctctctctctcctcaatct 606
           ||||||||||||||| |||||| |||||||||
Sbjct: 769 gtatgtatggattctgtctctc-cctcaatct 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1001
Length adjustment: 10
Effective length of query: 597
Effective length of database: 991
Effective search space:   591627
Effective search space used:   591627
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)