Query= MSMg01no528_g19.b1 MSMg01no528_g19.b1 CHROMAT_FILE:
MSMg01no528_g19.b1 PHD_FILE: MSMg01no528_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:01 2005
(640 letters)
>mm_chr15_39754804_39755837
Length = 1034
Score = 832 bits (430), Expect = 0.0
Identities = 502/536 (93%), Gaps = 22/536 (4%)
Strand = Plus / Minus
Query: 5 gaattcatcatatttattaagcatatagtctgcacgctaaataagagccccggcaggagt 64
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 518 gaattcgtcatatttattaagcatatagtctgcatgc----taagagccccggcaggagt 463
Query: 65 cacgaaattgaaaatggtggcaacttgctttttcctcagtgtctcctcctcttccctgct 124
|| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct: 462 caggaaattgaaaatggtggcaacttgcattttcctcagtgtctcctcttcttcc---ct 406
Query: 125 gctccatcccagcaggccattagcactaacagagacagagcttttcctt-aagtgtgagg 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 405 gctccatcccagcaggccattagcactaacagagacagagcttttccttcaagtgtgagg 346
Query: 184 cttcccagcaactttaaaagtcctttctcaagtagtttatattccaaaagaaggccactg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cttcccagcaactttaaaagtcctttctcaagtagtttatattccaaaagaaggccactg 286
Query: 244 ctaagcaatggtctctaaagcatctattcagagtggcaggtaatctgaatttttttcctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctaagcaatggtctctaaagcatctattcagagtggcaggtaatctgaatttttttcctc 226
Query: 304 tttgtgaatttccttttttttctttttttttaattagatattttcttcatttacatttca 363
||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 225 tttgtgaatttcctt-------ttttttttaaattagatattttcttcatttacatttca 173
Query: 364 aatgctatccccaaagtcccctatacccgctccccaccccaccctgcttcccaacccacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aatgctatccccaaagtcccctatacccgctccccaccccaccctgcttcccaacccacc 113
Query: 424 cactcccgcttcctggccctggcattgccctgt---actggggcatataatcttcacaag 480
||||||||||||||||||||||| || |||||| || ||||||||||||| ||||
Sbjct: 112 cactcccgcttcctggccctggcgttcccctgttcccct---gcatataatcttcgcaag 56
Query: 481 accaagggacctctcttcccaatgacggccgactaggccatcctctgctacatatg 536
|||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 55 accaaggg-cctctcctcccaatgatggccgactaggccatcctctgctacatatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1034
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1024
Effective search space: 645120
Effective search space used: 645120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_g19.g1 MSMg01no528_g19.g1 CHROMAT_FILE:
MSMg01no528_g19.g1 PHD_FILE: MSMg01no528_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:01 2005
(595 letters)
>mm_chr15_39601159_39602153
Length = 995
Score = 1023 bits (529), Expect = 0.0
Identities = 578/595 (97%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 ctcaagactgatccaaggcagaacatcacaagtctctatagcttctttggataaaataat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 201 ctcaagactgatccaaggcagaacaccacaagtctctatagcttctttggaggaaataat 260
Query: 61 ttgctttcaaagtagagccaacaaactccatgcaagatgttcctgggacatttgggtgtc 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ttgctttcaaagtagagccaacaaactccatgcaagatgttcctggttcatttgggtgtc 320
Query: 121 ccctagatgagtcccttgcaatgccacacttctccagcttcagtaacttgtgtgtgacca 180
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ccctaggtgagtcccttgcaatgccacgcttctccagcttcagtaacttgtgtgtgacca 380
Query: 181 ctgttctttctatcctatttacataggctctgctctgtcatttacttaaacattctctga 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttctttctatcctatttatataggctctgctctgtcatttacttaaacattctctga 440
Query: 241 atgaactcagcacttttacttaaaggatttatttaaattgataataacaatatctcatgc 300
|||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct: 441 gtgaactcagcacttttacttaaaggaattatttaaattgctaataataatatctcatgc 500
Query: 301 aatacaagcagtgtgtatgttgcttgtgtctatgtatattattcaggaagttaataacag 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacaagcagcgtgtatgttgcttgtgtctatgtatattattcaggaagttaataacag 560
Query: 361 caacagcaataacaacaaaacaaatagatgcactgtgtttttttctgaacgctttcagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacagcaataacaacaaaacaaatagatgcactgtgtttttttctgaacgctttcagtc 620
Query: 421 tttgattgcctgtgtggaagaggtagagagtcagctacacacacacacacacacacacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgattgcctgtgtggaagaggtagagagtcagctacacacacacacacacacacacac 680
Query: 481 acacacacacaaaacaaaccccactctcacttataagtcctcgtttggcagaacttgccc 540
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacacaca--aaacaaaccctactctcacttataagtcctcgtttggcagaacttgccc 738
Query: 541 ccccccctcccattctgtgttgaagagcttatggaactgcactgaagggtcaagg 595
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cccccactcccattctgtgttgaagagcttatggaactgcactgaagggtcaagg 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
