Query= MSMg01no528_l24.b1 MSMg01no528_l24.b1 CHROMAT_FILE:
MSMg01no528_l24.b1 PHD_FILE: MSMg01no528_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:26 2005
(629 letters)
>mm_chr15_66517136_66518164
Length = 1029
Score = 1087 bits (562), Expect = 0.0
Identities = 610/626 (97%), Gaps = 4/626 (0%)
Strand = Plus / Minus
Query: 6 ggaattcactctgatgccacataaaagttgtcaggcaaggagggtgcagcccagaacccc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ggaattcactctgatgccacataaaagttgtcaggcaaggagggtgcagcccagaacccc 770
Query: 66 agagacaactgagaaggatgggggctcagacaaggctcagagagagatgaatctcagatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agagacaactgagaaggatgggggctcagacaaggctcagagagagatgaatctcagatt 710
Query: 126 ctgttgaggtggggtcagtgaaaactcatcaggtcagagcctcttgcaagagcagcctgt 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 709 ctgttgcggtggggtcagtgaaaactcatcaggtcagagcctcttgcaagagcaggctgt 650
Query: 186 acg-cagaggaaggccaccactcagttgagctaggtttccgcactgacttcatatttggt 244
| | |||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 649 a-gacagaggaaggataccactcagttgagctaggtctccgcactgacttcatatttggt 591
Query: 245 ggacagggcacaggacactagctgtatgagctagactactagttttcctgacccagtttc 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 590 ggacagggcacaggacactagctgtatgagctagactactagatttcctgacccagtttc 531
Query: 305 cacagcaagtagaggagtaaacctgggcaagtgactaaggcagggttcaacttctctgtg 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 530 cacagcaagtagaggagtaaacctgggcaagtgactaaggcagggttcaacttctctgcg 471
Query: 365 taaggaatcatgggtagtattatatctttgttcttctgaaatgttaacagaattaataca 424
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 470 taagggatcatgggtagtattatatctttgttcttctgaaatgttaacagaattaacaca 411
Query: 425 atgacccaattatgtatttggcatgcaagttacctggttatgggctaggttaaaacactg 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 410 atgacccaattatgtatttggcatgcaagttacctggtcatgggctaggttaaaacactg 351
Query: 485 tgtggttgttgctaaaccagaggactgtgatacaaacctttgggacctgctctca-acat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 350 tgtggttgttgctaaaccagaggactgtgatacaaacctttgggacctgctctcata-at 292
Query: 544 tccctgaggtcaaaggagcaatgggttctcagtaaagagggtcatgttctttctccttcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tccctgaggtcaaaggagcaatgggttctcagtaaagagggtcatgttctttctccttcc 232
Query: 604 ctgtagacttggaagtgaaaggtaac 629
||||| |||||| |||||||||||||
Sbjct: 231 ctgtacacttgggagtgaaaggtaac 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_l24.g1 MSMg01no528_l24.g1 CHROMAT_FILE:
MSMg01no528_l24.g1 PHD_FILE: MSMg01no528_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:26 2005
(681 letters)
>mm_chr15_66360901_66361980
Length = 1080
Score = 1286 bits (665), Expect = 0.0
Identities = 677/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 1 tctgctgtaaaaattctttcaagcaatgatgaagaaaaaaatcactgggctgacgaatat 60
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 201 tctgctgtaaaaattctttcaagcaatgatgaag-aaaacatcactgggctgacgaatat 259
Query: 61 gtaggcagcatctgctattttgaaggcattggggtgggtgtggttcttgctttccagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 gtaggcagcatctgctattttgaaggcattggggtgggtgtggttcttgctttgcagatc 319
Query: 121 ttcatatatgagagtgtgtacatgaaaattggtaagcaggaaacaaggaaaacggagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcatatatgagagtgtgtacatgaaaattggtaagcaggaaacaaggaaaacggagaga 379
Query: 181 caataggagaagaagaggggaaggaaagggagaggtcaaagtatgtacatacaccatccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caataggagaagaagaggggaaggaaagggagaggtcaaagtatgtacatacaccatccg 439
Query: 241 acgagagctcttttcccataaacgaggatgtcagtggaggatatacatgcagtcttgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acgagagctcttttcccataaacgaggatgtcagtggaggatatacatgcagtcttgatc 499
Query: 301 tatttgcttttatgaaagaacaaaggaagagcgcagagcagtggggagatgcctgaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatttgcttttatgaaagaacaaaggaagagcgcagagcagtggggagatgcctgaaaac 559
Query: 361 taacttgggaaactaactacaacatatcaaatcacatagagcctcttccaggaaggctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taacttgggaaactaactacaacatatcaaatcacatagagcctcttccaggaaggctga 619
Query: 421 ccacaccccatacctctcccagtctggaaaaacttcctttcccatgttcacttgggctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccacaccccatacctctcccagtctggaaaaacttcctttcccatgttcacttgggctaa 679
Query: 481 ttactagatctatacttgtatttaccacatagaaaacattttaacctgcctattacttgc 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 ttactagatctatacttgtatttaccacatagaaaacattttaatctgcctattacttgc 739
Query: 541 atgtgactactattacactctgaaatattaagactgtccacacgccttggttttgtgacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgtgactactattacactctgaaatattaagactgtccacacgccttggttttgtgacc 799
Query: 601 ttgggacctatggaagaaccttattttaatgactgttcagataaactgtactggtacaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttgggacctatggaagaaccttattttaatgactgttcagataaactgtactggtacaga 859
Query: 661 gcatagttagcagtcaagttt 681
|||||||||||||||||||||
Sbjct: 860 gcatagttagcagtcaagttt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
