Query= MSMg01no529_h01.b1 MSMg01no529_h01.b1 CHROMAT_FILE:
MSMg01no529_h01.b1 PHD_FILE: MSMg01no529_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:24 2005
(598 letters)
>mm_chr15_42775932_42776930
Length = 999
Score = 1033 bits (534), Expect = 0.0
Identities = 562/572 (98%), Gaps = 4/572 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcttccttgctttcagatagctcctctggacattgtgctgcattgctgcacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcagcttccttgctttcagatagctcctctggacattgtgctgcattgctgcacca 510
Query: 65 aagtgctttctttgtctttggcatgatggagctttaagaatgcacttatttcttaagtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagtgctttctttgtctttggcatgatggagctttaagaatgcacttatttcttaagtga 450
Query: 125 ttgtgaggttgagtggcctgtcagtaatcatgcatgagggcagggctgcaacccagcctg 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 ttgtgaggttgagtggcctgtcagtaatcatgcatgaaggcagggctgcaacccagcctg 390
Query: 185 tttcacagcattccagcatctgtcctggtacactttttgtttctacttttcaatcttata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttcacagcattccagcatctgtcctggtacactttttgtttctacttttcaatcttata 330
Query: 245 ccttccatgcatccttggtcttaggctgtctttgaattagagcaggaaactggattgatt 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 329 ccttccatgcatccttggtcttaggctgtctttgaattagaacaggaaactggattgatt 270
Query: 305 tataatgattagggtaagtggttagtcactctgtgatt-acatgatcttttattttgtct 363
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 tataatgattagggtaagtagttagtcactctgtgattcacatgatcttttattttgtct 210
Query: 364 ctctccctctctttttttaaaaatgatttatttatttattattatatgtaagtacactgt 423
||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 209 ctctctctct-tttttttaaa--tgatttatttatttattattatatgtaagtacactgt 153
Query: 424 agctgtcttcagacacaccaggagagggtgtcagatgtcattaagggtggttgtaagcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 agctgtcttcagacacaccaggagagggtgtcagatgtcattaagggtggttgtaagcca 93
Query: 484 ccgtgtggttgctggaatttgaactcagaacctttggaagagcagtcagtgctcttaacc 543
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 92 ccgtgtggttgctggaatttgaactcagaacctttggaagagcagtcagtactcttaatc 33
Query: 544 actgagccatctctccagccccttattttgtc 575
||||||||||||||||||||||||||||||||
Sbjct: 32 actgagccatctctccagccccttattttgtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 999
Length adjustment: 10
Effective length of query: 588
Effective length of database: 989
Effective search space: 581532
Effective search space used: 581532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_h01.g1 MSMg01no529_h01.g1 CHROMAT_FILE:
MSMg01no529_h01.g1 PHD_FILE: MSMg01no529_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:24 2005
(640 letters)
>mm_chr15_42589197_42590236
Length = 1040
Score = 1176 bits (608), Expect = 0.0
Identities = 632/640 (98%)
Strand = Plus / Plus
Query: 1 catgaactcatgagcatagtcacctccacagcactacattcactatactgaatcctatct 60
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catgaactcatgaacatagtcacctccacagcactacattcactatgctgaatcctatct 260
Query: 61 tactgacttaactccactgcactgaactcaacagactgaacagccctccaactagacatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tactgacttaactccactgcactgaactcaacagactgaacagccctccaactagatatc 320
Query: 121 actttcccacatagctactctttctacaatctaaccttacctacattgtttgggattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttcccacatagctactctttctacaatctaaccttacctacattgtttgggattaaa 380
Query: 181 ggtatgtactaaatgtgtgtctgcattccagatagatcatacatacataggagatctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtatgtactaaatgtgtgtctgcattccagatagatcatacatacataggagatctttg 440
Query: 241 gacgcagtctcttgccagaccagcaatgttgctgaattaaaatgtctctattatattata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacgcagtctcttgccagaccagcaatgttgctgaattaaaatgtctctattatattata 500
Query: 301 agaaaatccagtcttcactgactacttatctcattttaaaaagccaaactgaattaggag 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaatccagtcttcactgactacttatctcattttaaaaagccaaactgaattaggag 560
Query: 361 cacggactggggatctttgttctaagtatggtgtatatatttaacaccatttatttcaac 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 cactgactggggatctttgttctaagtatggtgtatatatttaacaccatttatttcgac 620
Query: 421 cacaggtaccacctgtttctgtgcaaggcaatagctaccaatagtgagcaaagcttaaaa 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 cacaggtaccacctgtttctgtgcaaggcaatagctaccaatactgagcaaagcttaaaa 680
Query: 481 ctgtttgcctgctaatgttaatcaaaataatctagaaaagcagccctgactccatgtaat 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ctgtttgcctgctaatgttaatcaaaataatctagaaaagcagctctgactccatgtaat 740
Query: 541 tcatttattccttttagattagtaaagagaaccagagaaatgaatctgtagacatttgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatttattccttttagattagtaaagagaaccagagaaatgaatctgtagacatttgat 800
Query: 601 aatccctaaagatggccacattatactttctaatgtatgt 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatccctaaagatggccacattatactttctaatgtatgt 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
