Query= MSMg01no529_p19.b1 MSMg01no529_p19.b1 CHROMAT_FILE:
MSMg01no529_p19.b1 PHD_FILE: MSMg01no529_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:09 2005
(642 letters)
>mm_chr15_89438158_89439202
Length = 1045
Score = 915 bits (473), Expect = 0.0
Identities = 565/603 (93%), Gaps = 20/603 (3%)
Strand = Plus / Minus
Query: 5 gaattctgtaagacaatgcagaagggaggaaacctgcctccccc-gtccctatggctgca 63
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 604 gaattctgtaagacaatgcaggagggaggaaacctgcctccccctgtccctatggctgca 545
Query: 64 cttgggtggcaaaggtatgctgggcttcctggcattttcctaacaaatcagatggcaagc 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 cttgggtggcaaaggtatgctgggcttccttgcattttcctaacaaatcagatggcaagc 485
Query: 124 acccctccatggacttcagaaagcacttgctctccgtttggaagctctgtttgt-gg-ca 181
||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||
Sbjct: 484 acccctccatggacttcagaaagcacttgctctccttttggaagttctgtttgtaggtca 425
Query: 182 gtaaccccgg-ttaaccggaagacttaaagtgaggcttccacttcctgagttggttggga 240
|||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 424 -taacaccggtttaaccggaagactcaaagtgaggcttccacttcctgagttggttggga 366
Query: 241 tgactttcagaatggtctagggttccctgcagcctcggtcctgtggcccgctgctctggg 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgactttcagaatggtctggggttccctgcagcctcggtcctgtggcccgctgctctggg 306
Query: 301 gctcatctgcgacggtacagttttcaacgctgtgtgttaggatcagactttcatttcttc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctcatctgtgacggtacagttttcaacgctgtgtgttaggatcagactttcatttcttc 246
Query: 361 agcctgcaatagctgcagatccacctgttgaaaacggggga-tgtgaggctggggagatg 419
|||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 245 agcctgcaatcgctgcagatccacctgttgaaaacgggggact-tgaggctggggagatg 187
Query: 420 gatcggtgggtaaggtgcttgctatgcacataaggacccacagcgccgagttaaaaaa-- 477
||||||||||||||||||||||| || || ||||||||| ||||||||||| ||||||
Sbjct: 186 gatcggtgggtaaggtgcttgctgtgaacgtaaggacccgcagcgccgagtaaaaaaaaa 127
Query: 478 -----caaaaaagctggacatgtctataacctataaccacagataactccagtgaagtgt 532
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 126 aaaaacaaaaaagctggagatgtctataacctataaccacagataactccaatgaagtgt 67
Query: 533 gggacagcaaatgcctttgacctcagcagtcaggaggaaga------tgggcctgggagc 586
||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 66 gggacagcaaatgtctttgacctcagcagtcaggaggaagaggcaggtgggtctgggagc 7
Query: 587 tcc 589
|||
Sbjct: 6 tcc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1045
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1035
Effective search space: 654120
Effective search space used: 654120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_p19.g1 MSMg01no529_p19.g1 CHROMAT_FILE:
MSMg01no529_p19.g1 PHD_FILE: MSMg01no529_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:09 2005
(396 letters)
>mm_chr15_89273532_89274327
Length = 796
Score = 743 bits (384), Expect = 0.0
Identities = 393/396 (99%)
Strand = Plus / Plus
Query: 1 agcacagttaccattttctatgaaggttgctgcatggagacagtatttcttttatagaga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacagttaccatttgctatgaaggttgctgcatggagacagtatttcttttatagaga 260
Query: 61 gctgctttaaagcaagaatgttaaagtagcaccaaaccatattggaggcctgagtgtata 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gctgctttaaagcaagaatgttaaagtagcagtaaaccatattggaggcctgagtgtata 320
Query: 121 tgtccttaggtgtggctcacacctctccacgtagttcctgggtctcagaaatacaacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtccttaggtgtggctcacacctctccacgtagttcctgggtctcagaaatacaacttc 380
Query: 181 tgttttgtattgttagcttttgtttctagtaaagatatcctaacttcctgtatctctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttgtattgttagcttttgtttctagtaaagatatcctaacttcctgtatctctgtg 440
Query: 241 atctggggtttgccttatcaactgtagtcttgccatggatacagtggtcaccatcctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctggggtttgccttatcaactgtagtcttgccatggatacagtggtcaccatcctgtg 500
Query: 301 acctcatttaagttgcttagcaacctctcaagtgaagaatctcataaactcttcatatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctcatttaagttgcttagcaacctctcaagtgaagaatctcataaactcttcatatgg 560
Query: 361 ctattgttaagataaatgaaatgaataaactcttgt 396
||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctattgttaagataaatgaaatgaataaactcttgt 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
