BAC Information

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BAC

Clone NameMSMg01-530E11
Chromosome15 (Build37)
Map Location 80,708,435 - 80,897,872
singlet/doubletdoublet
Overlap geneTnrc6b, Adsl, LOC625672, Rutbc3, Mkl1
Upstream geneApobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneLOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530E11.T7 (MSMg01no530_e11.b1)MSMg01-530E11.TJ (MSMg01no530_e11.g1)
ACCAG598954AG598955
length764773
length of high quality
(start - end)		626 (55 - 680)649 (72 - 720)
definitionCHROMAT_FILE: MSMg01no530_e11.b1 PHD_FILE: MSMg01no530_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:32 2005CHROMAT_FILE: MSMg01no530_e11.g1 PHD_FILE: MSMg01no530_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,897,247 - 80,897,872)(80,708,435 - 80,709,083)
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATGCG
CGGAATTCCTATCCCCTCTCTTGGTTCTTTCTCATCTACAAACATTTTAA
ACACAGTCGTCAAGTAAAACACAATAGTGCTGTGTTTTAGCTCCTGTTCA
TCCTCAGTACAGGCTTTGCACAGAAGGAGGCAGAGGCAAGAAGAGGGAAC
CAGGTCACGTGGTATTGCCTGGCAGGAGCCTTTTGGTTCTGAGCAGAGAA
ACCAACTGTTTACTATTTTGGGTGAATGAGGTTGGGTGGTTGCTACGAAC
GTTTTCTCTGAGGGAGCCCTTGAGTCTTCCTGCTCTACACACTGAAATCA
TCCCAGCTCTGCTTTTTGGCATTTGGATCGTGGAGGGAGGTATCGGTGTC
GAGTCCCAGTGCTGACAGGAAGAAATGTTTTGCCAGGGACTTACTGATTC
TGCCCTTCTGCTGTCAGTGCTTTAGTGCTCCACTCCTAAGGAAACCTGGG
ATCTCACTGCTCTTGCAACCCTTTGCACTGCAAAAAATGAAGTGCCCACT
TTAAAGTGCAATGCTACTTAAAGCCTCAGCAGATAACGAATGGCTGCCCT
AAGGAGGGCAGGCATGGAGACTGGCTGCTTGCAGTATTGGCCTCTGGAGT
CTTGTATCTCCAGCCCACTAGAGAAGACCAAGATTTGTCAGCCTGCCTGC
ANGATCCTGCCATTCTCATGGATCGTCCTGAAGCCTGAGAAAGACAGCTG
CTCAGCTATGTGTN

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACGTTAGCAAGATAGGCTCACAGTGAA
AAGCACAGTGTGGGGAAGGAAGGACGGGAACAGAGGCTACCATTTGAGGA
AATAGCTCCGACAGTTCCTAGCGACAGACAGTTTTTCAGTTGACAAGCTC
AGAAGTAGCTGCCTAGATAAAGTGGCACTTGAGGTATGTCTAAAAAGATG
AATATATTTCACTGTGTGGAGTTGGGGAGAAAACGGCAGGTGCCAGTCTT
GAATGGTGCCCAGAGTAAGACTGTAGACATCTTTGTAGAAAGTTATAACA
GGTAGAACTGGGAAGACTGGTTGGCCTTAGGTCATAGAACATCTTAATGA
AGCTAACCAACGGGTTTTGTTTTTCTGTGCACTAGGGAATTGTTAAACAC
TCTCAGAGAGCAGTAATGGAACCAAAGGGGTATTTTAGAAAAACAGCTCC
AGCCTTGAGTGTTAGAATAGATTAAAGAAACATAGCATGGCTTGTTGCAT
TTTCTCAGGATACAAGAAGGTCCTTCTGTTTCAGTAAGAATGGCAAATAG
GTAGCTTTGAGAGTGGATACAGAGTTGGATGTTGCACATGCAGCACTAGC
TAGTGACAAAGAGGAAACTCTAGCATCTCCTCACAGGCCTGATGACCTAA
ATTTTAGTCCCTAAGACTCATATGGTAGAAGGAGAACAAATTGTCCTCTG
ACCTCCACACTGGCACTATGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_e11.b1 MSMg01no530_e11.b1 CHROMAT_FILE:
MSMg01no530_e11.b1 PHD_FILE: MSMg01no530_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:32 2005
         (626 letters)



>mm_chr15_80897031_80898056
          Length = 1026

 Score = 1151 bits (595), Expect = 0.0
 Identities = 619/627 (98%), Gaps = 2/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctatcccctc-tcttggttctttctcatctacaaacattttaaacacagtcgtcaa 59
           ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 attcctatctccacat-ttggttctttctcatctacaaacattttaaacacagtcgtcaa 784

                                                                       
Query: 60  gtaaaacacaatagtgctgtgttttagctcctgttcatcctcagtacaggctttgcacag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gtaaaacacaatagtgctgtgttttagctcctgttcatcctcagtacaggctttgcacag 724

                                                                       
Query: 120 aaggaggcagaggcaagaagagggaaccaggtcacgtggtattgcctggcaggagccttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aaggaggcagaggcaagaagagggaaccaggtcacgtggtattgcctggcaggagccttt 664

                                                                       
Query: 180 tggttctgagcagagaaaccaactgtttactattttgggtgaatgaggttgggtggttgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tggttctgagcagagaaaccaactgtttactattttgggtgaatgaggttgggtggttgc 604

                                                                       
Query: 240 tacgaacgttttctctgagggagcccttgagtcttcctgctctacacactgaaatcatcc 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 603 tacgaacgttttctctgagggagcccttgagtcttccagctctacacactgaaatcatcc 544

                                                                       
Query: 300 cagctctgctttttggcatttggatcgtggagggaggtatcggtgtcgagtcccagtgct 359
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 543 cagctctgctttttggcatttggatcatggagggaggtatcggtgtcgagtcccagtgct 484

                                                                       
Query: 360 gacaggaagaaatgttttgccagggacttactgattctgcccttctgctgtcagtgcttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gacaggaagaaatgttttgccagggacttactgattctgcccttctgctgtcagtgcttt 424

                                                                       
Query: 420 agtgctccactcctaaggaaacctgggatctcactgctcttgcaaccctttgcactgcaa 479
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 423 agtgctccactcctaaggaaacctgggatctcactgctcttgcaactctttgcactgcaa 364

                                                                       
Query: 480 aaaatgaagtgcccactttaaagtgcaatgctacttaaagcctcagcagataacgaatgg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaaatgaagtgcccactttaaagtgcaatgctacttaaagcctcagcagataacgaatgg 304

                                                                       
Query: 540 ctgccctaaggagggcaggcatggagactggctgcttgcagtattggcctctggagtctt 599
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 303 ctgccctaaggagggcaggcatggagactggctgcttgcaatattggcctctggagtctt 244

                                      
Query: 600 gtatctccagcccactagagaagacca 626
           |||||||||||||||||||||||||||
Sbjct: 243 gtatctccagcccactagagaagacca 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_e11.g1 MSMg01no530_e11.g1 CHROMAT_FILE:
MSMg01no530_e11.g1 PHD_FILE: MSMg01no530_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:32 2005
         (649 letters)



>mm_chr15_80708235_80709283
          Length = 1049

 Score = 1247 bits (645), Expect = 0.0
 Identities = 648/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacgttagcaagataggctcacagtgaaaagcacagtgtggggaaggaaggacgggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacgttagcaagataggctcacagtgaaaagcacagtgtggggaaggaaggacgggaac 260

                                                                       
Query: 61  agaggctaccatttgaggaaatagctccgacagttcctagcgacagacagtttttcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggctaccatttgaggaaatagctccgacagttcctagcgacagacagtttttcagtt 320

                                                                       
Query: 121 gacaagctcagaagtagctgcctagataaagtggcacttgaggtatgtctaaaaagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaagctcagaagtagctgcctagataaagtggcacttgaggtatgtctaaaaagatga 380

                                                                       
Query: 181 atatatttcactgtgtggagttggggagaaaacggcaggtgccagtcttgaatggtgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatatttcactgtgtggagttggggagaaaacggcaggtgccagtcttgaatggtgccc 440

                                                                       
Query: 241 agagtaagactgtagacatctttgtagaaagttataacaggtagaactgggaagactggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagtaagactgtagacatctttgtagaaagttataacaggtagaactgggaagactggt 500

                                                                       
Query: 301 tggccttaggtcatagaacatcttaatgaagctaaccaacgggttttgtttttctgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggccttaggtcatagaacatcttaatgaagctaaccaacgggttttgtttttctgtgca 560

                                                                       
Query: 361 ctagggaattgttaaacactctcagagagcagtaatggaaccaaaggggtattttagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagggaattgttaaacactctcagagagcagtaatggaaccaaaggggtattttagaaa 620

                                                                       
Query: 421 aacagctccagccttgagtgttagaatagattaaagaaacatagcatggcttgttgcatt 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccgctccagccttgagtgttagaatagattaaagaaacatagcatggcttgttgcatt 680

                                                                       
Query: 481 ttctcaggatacaagaaggtccttctgtttcagtaagaatggcaaataggtagctttgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctcaggatacaagaaggtccttctgtttcagtaagaatggcaaataggtagctttgag 740

                                                                       
Query: 541 agtggatacagagttggatgttgcacatgcagcactagctagtgacaaagaggaaactct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtggatacagagttggatgttgcacatgcagcactagctagtgacaaagaggaaactct 800

                                                            
Query: 601 agcatctcctcacaggcctgatgacctaaattttagtccctaagactca 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcatctcctcacaggcctgatgacctaaattttagtccctaagactca 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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