BAC Information

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BAC

Clone NameMSMg01-531L09
Chromosome15 (Build37)
Map Location 35,809,300 - 35,809,887
singlet/doubletsinglet
Overlap geneVps13b
Upstream geneStk3, Osr2, EG666183
Downstream geneCox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531L09.T7 (MSMg01no531_l09.b1)MSMg01-531L09.TJ (MSMg01no531_l09.g1)
ACCAG600044AG600045
length952776
length of high quality
(start - end)
---588 (76 - 663)
definitionCHROMAT_FILE: MSMg01no531_l09.b1 PHD_FILE: MSMg01no531_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:25 2005CHROMAT_FILE: MSMg01no531_l09.g1 PHD_FILE: MSMg01no531_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCATCCACCCTACAACTTCTCTCCTCACTCTTTTTACACACTGACCAG
TGCGCTGCTTTCGTTGGTCTCCGCTTGCTGTCCGCCTCGTTGTTGCTACG
CTTTACCTTACACAGACTCGCATAACTACGACTCACCGCACCGCTTTCGT
TAGCCTTAATCCGACCGAACGTCTGAGCTCGGCATTACGCCGTACCGCGC
TGCATTATTCTATCCGTGGTGTAGCAGTATGCTTATTTTGCGTCCGTCGN
GCGCCACCCCACAAAAAAAAAAAATATTGTGTGCGGGGGGGACCGCTCTT
TAAAATAAACCGNNAAACCTTTCCCAACCCTAAAATTTATTGTGCTCTCC
CAGGAAAANGNAAAATTCCCCCGGCCGGTNGTTAAAAATTTTCCCCTTTT
CCCAAAGNNTTATATTATTTAAGCCCCCAAAAAAGGAAAAGAGTTTTTAA
AAAACCAATAAAGGGGGCCTCTTTCCCAAAAGAGGCCCTTTCCCCTTTTT
TAAAAAAAATATTCCTCCCCCTCCAAAAAAAACAAACCCCTTTTTGTTGG
GGGAAAGAAGAAAAAGGGGGGGCCCACAAGGGAAAAGAGGGGTGTCCCCC
CCAAGAGGGGGGGAAAAAAAGGGGGGGAAAAAAAGACGCCCTTCCTCCCC
CTGGGGGGGGGGGGGGTGGAGAAAAAAAAAAAAATATCTCCCCCTCTTGG
GGGGCGGAAAAAGAAAGGGGGCCGGAAAAAAATAATAAAATAGGAGAGCG
CGGCCCCCCCCTTCTTTTGTTGGTGGGGTGGGGGGGAGGGATATCTTCTA
TTCCCCTCCCCCCTCCCCCTTATAAGAAACAAATATACTCCAACGGTAGT
GCGTGATCGTATTAAGACAAAATAAAAATAACTCTCTCAGTAGTCGTGGG
GCGGGACGTCTCAATATAAATACAGTACTCTTTTCTTGGTTGTCTTCGTC
GT
NTCCATACAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGGTTAGTTACAGCTTGAGGTTG
ATTTTTCTCTCTTCCCTGAACTTGAATATCATTGTGAATCCAAAGGATAT
TGTAAACCAAAATAAAATACATGTTGCCATTACCAAAATAAAAGTACAGG
GGACTATTTGGTTGCCTTAATATATCTATTGTATATATTTTTAAATCCTG
GCGATATGGAATGGTTAAGAACAATACAATTGAGGCATTGTTTTTCCAGG
AAGCTTTTCAAATTGGAATTTACTGGGAAAATACAAACACTGTGCACAAG
ACATTAGCAATTAAACTGGTCCATAATCTGACATCTCCAAAGTGGAAAGA
TGGCGGGAATGGTGAGGTAGTGACACTGGATGAAGAAGCATTTGTTGATG
CTGAAATCAGACTCGGAGCTTTCCCAGGACATCAGAAGGTAAGGTCAATG
TGGATGTGGTGCAGGGGAGAGCATATGTGTGCTCCTAGAGTGCTTTAAGT
ATGTCTGCCTCACTTTCTAAGTCCCGTTCTGGTGTTACTCTAATTGATAA
CAGTGAAATACTTGTTTTCTTAACTTCCTAGACTTTTGTTTTACAGTGGA
ATTTTTTTCTTTATTAGTGGTAAAACCTGGGTTACATAATCTATCCAGTA
ATGGCTCCATTTCAGAGCTGTCACCAGTCATTCGAATTATAGTATGGGGA
CTGGACTTATTCTCAATATTCACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_l09.g1 MSMg01no531_l09.g1 CHROMAT_FILE:
MSMg01no531_l09.g1 PHD_FILE: MSMg01no531_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:25 2005
         (588 letters)



>mm_chr15_35809100_35810087
          Length = 988

 Score = 1137 bits (588), Expect = 0.0
 Identities = 588/588 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggttagttacagcttgaggttgatttttctctcttccctgaacttgaatatcattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggttagttacagcttgaggttgatttttctctcttccctgaacttgaatatcattgt 260

                                                                       
Query: 61  gaatccaaaggatattgtaaaccaaaataaaatacatgttgccattaccaaaataaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatccaaaggatattgtaaaccaaaataaaatacatgttgccattaccaaaataaaagt 320

                                                                       
Query: 121 acaggggactatttggttgccttaatatatctattgtatatatttttaaatcctggcgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggggactatttggttgccttaatatatctattgtatatatttttaaatcctggcgat 380

                                                                       
Query: 181 atggaatggttaagaacaatacaattgaggcattgtttttccaggaagcttttcaaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggaatggttaagaacaatacaattgaggcattgtttttccaggaagcttttcaaattg 440

                                                                       
Query: 241 gaatttactgggaaaatacaaacactgtgcacaagacattagcaattaaactggtccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatttactgggaaaatacaaacactgtgcacaagacattagcaattaaactggtccata 500

                                                                       
Query: 301 atctgacatctccaaagtggaaagatggcgggaatggtgaggtagtgacactggatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctgacatctccaaagtggaaagatggcgggaatggtgaggtagtgacactggatgaag 560

                                                                       
Query: 361 aagcatttgttgatgctgaaatcagactcggagctttcccaggacatcagaaggtaaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcatttgttgatgctgaaatcagactcggagctttcccaggacatcagaaggtaaggt 620

                                                                       
Query: 421 caatgtggatgtggtgcaggggagagcatatgtgtgctcctagagtgctttaagtatgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatgtggatgtggtgcaggggagagcatatgtgtgctcctagagtgctttaagtatgtc 680

                                                                       
Query: 481 tgcctcactttctaagtcccgttctggtgttactctaattgataacagtgaaatacttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcctcactttctaagtcccgttctggtgttactctaattgataacagtgaaatacttgt 740

                                                           
Query: 541 tttcttaacttcctagacttttgttttacagtggaatttttttcttta 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttcttaacttcctagacttttgttttacagtggaatttttttcttta 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)