NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGATGTTCGAATATCATAGTAGGAGAAAAAGTAGCAGGA
CAAAGGCAGATGTACCTTTGTAGGACAATATACACTGCAAAGGTCAAGTG
CAGGTCTGCTTCTGAAGCTTTGTGAGTTTGCAGCTTGGAATTAACATAGT
CCCAAATATAGAGGAAAAAAAAAAAGAAACATAAAAGAGAAAAAGTTTTC
CAAAGTTAGGATATTAGAAGAAAAGAAATAGGAATATGCTGGTGACATGA
ATTTTACTAAAGAGTAACGAAAGTTACTATACTTTCCATCTTAATCCAAA
AAAAAAAAAAAAAATTCCTGAAACTTAGAAACAAAGTATGCAAATAAATT
AGAAAATTATATTTTATAAGTATATGTTGGTAAACTGATAAACATGTAGA
ACTTCTTGAAATGATTTCAAATATTTCATTTGCCTTGAATAAAAATTCTA
ATCTTAAATGGGCATTTTACTGAATAATTTTCATTGAGAGTTATTACTCA
ATTGATTATTACTGAATCACTTTCACTCTTTCAAAGTTAATATTATGTTA
ATAAAGACAAAAAGTCTACATTTAATTTATTTTTCAATTGCTTTTAAACT
TGTTTTCATGTACTGATATAAACATAATAGCTTTATTACTAAGTAGGATC
TTATATGAATTTCAGTTACTTTTTTAAAAAGACTATAGCAGTAGTAAAAA

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGGTGAAAGGCAAACT
TAAGAATCTTACTAACAGAAACCAAGACCACTCCGCAACATCAGAACCCA
GTACGCCCACCACAGCAAGTCCTGGATGCCCCAACACACCTGAAAAGCAA
GATTCAGATTTAAAATCATCTCATGATACTGGTAGAGGATTTTAAGAAGG
GCATTAATAACTCAAAGAAATATAAGAGAACACTGCTAAAAAAGTAGAAG
TCCTTAAAGAGGAAACACAGAAATCCCTTAAAGAATTACAGGAAAACACA
ACCAAAAAAGGTGATGGTGAAAGAGCCACAACATGAGGACTCCCCCACTT
TCTGACTCAGGAGAGGTGACACCGAAATCACTCATGAGAAACGGTCTTGC
TGCTAACTGCAAGAGGACTTTTTATTCCAAGAGTTCTCTTGGGCCCACAG
TCATACACCACACAGGGGTAGAGGATCATGGCACCCCGAGTAGCTGGGTA
AGGGGATATTTAAAGGAAGAAACCACAACTCAAGGAGGTGGGGAGGGCAT
TGCTGGAAAATACCAAAAATACCAGGTAAGAGTCACAAGGAAGTGCAAAG
TCACAAGGAATACCTGGTAATTGTGTGGGTTATTTCTCAAGACAGTTTCT
AAGAGCCCCTAGTAATACCACATTTGCATAGCAGGTTCCAGCAATGGTTA
GG

Query= MSMg01no531_m03.b1 MSMg01no531_m03.b1 CHROMAT_FILE:
MSMg01no531_m03.b1 PHD_FILE: MSMg01no531_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:29 2005
         (700 letters)



>mm_chr15_47219100_47220198
          Length = 1099

 Score = 1251 bits (647), Expect = 0.0
 Identities = 687/709 (96%), Gaps = 17/709 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgatgttcgaatatcatagtaggagaaaaagtagcaggacaaaggcagatgt 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcctgatgctagaatatcatagtaggagaaaaagtagcaggacaaaggcagatgt 255

                                                                       
Query: 64  acctttgtaggacaatatacactgcaaaggtcaagtgcaggtctgcttctgaagctttgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acctttgtaggacaatatacactgcaaaggtcaagtgcaggtctgcttctgaagctttgt 315

                                                                       
Query: 124 gagtttgcagcttggaattaacatagtcccaaatatagaggaaaaaaaaaaagaaacata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagtttgcagcttggaattaacatagtcccaaatatagaggaaaaaaaaaaagaaacata 375

                                                                       
Query: 184 aaagagaaaaagttttccaaagttaggatattagaagaaaagaaataggaatatgctggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaagagaaaaagttttccaaagttaggatattagaagaaaagaaataggaatatgctggt 435

                                                                       
Query: 244 gacatgaattttactaaagagtaacgaaagttactatactttccatcttaatccaaaaaa 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 436 gacatgaattttactaaagagtaaggaaagttactatactttccatcttaatccaaaaaa 495

                                                                       
Query: 304 aaaaaaaaaaa--------ttcctgaaacttagaaacaaagtatgcaaataaattagaaa 355
           |||||||||||        |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaaaaaaaaaaaaaaaaattcctgaaacttagaaacaaagtatgcaaataaattagaaa 555

                                                                       
Query: 356 attatattttataagtatatgttggtaaactgataaacatgtagaacttcttgaaatgat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 attatattttataagtatatgttggtaaactgataaacatgtagaacttcttgaaatgat 615

                                                                       
Query: 416 ttcaaatatttcatttgccttgaataaaaattctaatcttaaatgggcattttactgaat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttcaaatatttcatttgccttgaataaaaattctaatcttaaatgggcattttactgaat 675

                                                                       
Query: 476 aattttcattgagagttattactcaa----ttgattattactgaatcactttcactcttt 531
           |||||||||||||||||  ||   ||    ||||||||||||||||||||||||||||||
Sbjct: 676 aattttcattgagagtt--ta---aacaccttgattattactgaatcactttcactcttt 730

                                                                       
Query: 532 caaagttaatattatgttaataaagacaaaaagtctacatttaatttatttttcaattgc 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 731 caaagttaatattatgttaataaagacaaaaagtctacatttaatttattttccaattgc 790

                                                                       
Query: 592 ttttaaacttgttttcatgtactgatataaacataatagctttattactaagtaggatct 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttttaaacttgttttcatgtactgatataaacataatagctttattactaagtaggatct 850

                                                            
Query: 652 tatatgaatttcagttacttttttaaaaagactatagcagtagtaaaaa 700
           ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 851 tatatgaatttcagttacttttttaaaaagactatagtagtagtaaaaa 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1099
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1089
Effective search space:   751410
Effective search space used:   751410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)