BAC Information

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BAC

Clone NameMSMg01-532K05
Chromosome15 (Build37)
Map Location 100,942,951 - 100,943,505
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
Downstream geneAnkrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532K05.T7 (MSMg01no532_k05.b1)MSMg01-532K05.TJ (MSMg01no532_k05.g1)
ACCAG600750AG600751
length875758
length of high quality
(start - end)		---569 (81 - 649)
definitionCHROMAT_FILE: MSMg01no532_k05.b1 PHD_FILE: MSMg01no532_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:36 2005CHROMAT_FILE: MSMg01no532_k05.g1 PHD_FILE: MSMg01no532_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTCTTTTTTTCCGCTTCCCCTCCTACTTTTTTTTTTCTCCCCCTT
CCGGCCTCCTTCTCTTTTTTTTTCTCCTTCCTACTACCCCACTCCCTCCC
TCCCCCCCCTTTTTCCCTTCTTGTCCCCCCCTCCTCCCTTTCTTTTTTTT
TCTCCTGCTCTTCCTTCTTTCTTCTTCTCTTAGCCTCTTTTTTCCCCTTT
TTCTTCCTTTTCTCCCTCNCCCCTCTCCTCTTAAAAGCCTGCCCTCTCCC
CTTGCTCCCTTTTTCCTCTTTTTTTTCTTCCCTTCCCCCCCCCCCCTTGC
CCCCCACCTCTCCCCCTCCCCCCTTCTCTCCCCCTGTNCCCCTCTCCTTC
ACCCACCCCCCCCCCCCCCTCCCCTCCCCCTCCTTCCCCCTTCACTATCT
TTCCCTCTCTTTCCCTCCCTGCCTCTTTTCCCTCTCCTCTCTCTTTCTCC
CCTCTCTTCTTTTCCTCCTTCCCCCCTTCTTCTTTTTCTCCTATCCCTTT
TGCTTTCTCCCTGCTCCCTTTCCCTGCCCCTCCTCTCCTCCTTTTTCTTG
CTGCTCTCTTTCTCCCTCTCCCCTTTTTGTTTGTTCCCTCCTGCCTGTCT
TGTTTGCTCTCCTTCTTCCCCTCNCTATNNNNNNNNNNNNAGGTTGTTTN
TTCTCCCCTTGCTTTCTTCTTCCNCTCCTCTGNTTCGCTGTTNTTGTTTT
TGGNCNNATGGNNNNNGNAGGAGCGTTCACGTNGGGTGANGCGNNGGGNG
CCGNNGTGGAATGGCNAGAANGTCCAGATNANNNATGNGCNNGTTTGCAA
AATNNGCNNGNGGGNNANNAATTCNNGCGGGAAGGNGGGNTTTCCANGNN
GATGNCGTNGAGGGGCTGGAACTTG

GGCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCAGTAGGTAGAAAATA
TCTATGACGTTATAGGCCAGACATCTCTGATCATTTACAGACACCCTATC
TACAGCTTCCTTTTTCTCTAGTCATCTTAGAGCTAGCTGCTGTATGGAAT
CCCAGTGGATGAGCACAGGTGTGTGCACACAGGTGCATGTGCACAGGTGG
ATGCACACAGGTGTGTGTACACAGGTGAATGAGCACAGATGGATGCACAC
AGGTGGGTGCACACAGGTGGATAGACATAGGCATGTGCACACAGGTGTGT
GCACACAAGTGAATGCACACAGGTGTGTGCACACAAGTGAATGCACACAG
GTGTGTGCACACAAGTGAATGCACACAGGTGTGTGCATCCACATTTAGCT
TTCCCATTCTTCCAGAGGTGCATAAGCGCAGGTGTGTCCATGCAGGTGGA
TGAGCACAGGTGTGTGCATCCACCACATTTAACGTTCCCATTCTTCCAGG
AGTGAATGTACCTTAAGGAACAGTTTATTTTGTCTCACAGCTCTAGGGTT
CAATCTACCACAACCGAGAGGTTATGGAAGCAGGAGAATGAGGCAGCCTG
CTCTACAGAGAGAGTTCTGGGACAGCCAGGGCTACACAGAGAAACTGTGT
CTCAAAAAAAAAAAACCCAAAAAGTAAGAGAAAGAAAGGAAGAAAGTGAG
CAAGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_k05.g1 MSMg01no532_k05.g1 CHROMAT_FILE:
MSMg01no532_k05.g1 PHD_FILE: MSMg01no532_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:36 2005
         (569 letters)



>mm_chr15_100942825_100943793
          Length = 969

 Score =  924 bits (478), Expect = 0.0
 Identities = 542/572 (94%), Gaps = 20/572 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcagtaggtagaaaatatctatgacgttataggccagacatctctgatcatttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgcagtaggtagaaaatatctatgacgttataggccagacatctctgatcatttacag 622

                                                                       
Query: 61  acaccctatctacagcttcctttttctctagtcatcttagagctagctgctgtatggaat 120
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 acaccctatctacagctttctttttctctagtcaccttagagctagctgctgtatggaat 562

                                                                       
Query: 121 cccagtggatgagcacaggtgtgtgcacacaggtgcatgtgcacaggtggatgcacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccagtggatgagcacaggtgtgtgcacacaggtgcatgtgcacaggtggatgcacacag 502

                                                                       
Query: 181 gtgtgtgtacacaggtgaat-gagcacag--atggatgcacacaggtgggtgcacacagg 237
           ||| ||| ||||||||| || || || ||  |||  |||||||||||| ||||||||| |
Sbjct: 501 gtgggtgcacacaggtggataga-cataggcatg--tgcacacaggtgtgtgcacacaag 445

                                                                       
Query: 238 tggatagacataggcatgtgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtg 297
           |     ||       |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 t-----ga-------a--tgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtg 399

                                                                       
Query: 298 tgcacacaagtgaatgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtgtgca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgcacacaagtgaatgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtgtgca 339

                                                                       
Query: 358 tccacatttagctttcccattcttccagaggtgcataagcgcaggtgtgtccatgcaggt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 338 tccacatttagctttcccattcttccagaggtgcataagcgcaggtgtgtccacgcaggt 279

                                                                       
Query: 418 ggatgagcacaggtgtgtgcatccaccacatttaacgttcccattcttccaggagtgaat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 278 ggatgagcacaggtgtgtgcatccaccacatttaacgttcccattcttccaggggtgaat 219

                                                                       
Query: 478 gtaccttaaggaacagtttattttgtctcacagctctagggttcaatctaccacaaccga 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gtaccttaaggaacagtttattttgtctcacagctctagggttcaatctaccacaaccga 159

                                           
Query: 538 gaggttatggaagcaggagaatgaggcagcct 569
           ||||||||||||||||||||||||||||||||
Sbjct: 158 gaggttatggaagcaggagaatgaggcagcct 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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