BAC Information

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BAC

Clone NameMSMg01-533L01
Chromosome15 (Build37)
Map Location 4,151,806 - 4,152,458
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666167, Sepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533L01.T7 (MSMg01no533_l01.b1)MSMg01-533L01.TJ (MSMg01no533_l01.g1)
ACCAG601553AG601554
length780751
length of high quality
(start - end)
184 (56 - 239)657 (81 - 737)
definitionCHROMAT_FILE: MSMg01no533_l01.b1 PHD_FILE: MSMg01no533_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:57 2005CHROMAT_FILE: MSMg01no533_l01.g1 PHD_FILE: MSMg01no533_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTACCGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAGATGTCCTTCAATGTATTTTTAACCAAATTAGT
AAATCCATGTGTAATGTTGATCCACAGTAAAAAAAAAAAACAAAAAACAA
GCAAACAAAAACAAAAAACAAACAAAAAAAACCAATGTATTACAATATAT
GCAACAACCAGTATGAATCCTCAAGAAATTACAGAGTGAANAAAATNNAA
ATGTCCATAAATATCTAATTATTTCATTTATAACATTTTTAGAAAGAAAA
ACAATTTTTTTTTTTGTTCTCAAAAAAAAACATTTTTTTGTTTTTCTTTT
TGTGGTCCGTAAAATATATCCCCCCCCCCACCCATACAAAAAAGTAATAA
ACGCTCCTCTTTTTTTTTTTTTTTCCACATATCACTTTTATTCCCACTAT
TCCCCTTTCCTATGTCCCTAAATTAAACCCACAACACTTTTTTCTTCCCC
TTTGTGTCTCCCTCCTGTCTTCCCGTGGTTTTCCTCAGCGCCGGCGCGGA
CCCTTGTTCTTTCTTTTCCCCCCCCCCCCACTTTTTTTTCTTTTTTTATC
CCCGTGTCGCATGTGTTGGGNNCTGGTTAATCCCAAAATACGCTAAAAGC
CCACGCTTATAAGAGTGCAGAGACGCCACNACCACCTTTCCCTTTTATCC
CTTTTTTCTCCNNNNGGGNNNCNNNNNNNNCNNNNNNNCCCCCCNNNNNN
NNNNNNNNNNNNNNTAAGCCCCAATCCCNA
NTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTATCTATACCACCCACC
CATGCTGTACTAGTCCTGAGATTAAAGATGCCAATCACTACAATGACTTT
TCTGTGTTTTCTTTGTGCCTTCTGGGCTCAAACTAAGGTTATCAGGCTTG
CAAGTAACTTAATGCACTGAGCCATCATGGCACCCCAACATTTTTTATTT
GATTTTAACTAATACAAAAGAGTAATGATGGAATCTTATATGTTCCTTGT
TTAATTTAATTAAATAACATTTCTTGCTTCCCTCTCCTTTCTCCTTACCC
TTCCTACCCTCTGGTATCTGCCTAACTCTTTCAAATTCATACAGCCTCCA
CTTCTGTAATATATATATATATATATATATATATATATCAGGATATCAAT
ATATATGTATAATAAAAAGTGTGTGCATATATGTGTAAAAGTACTTTTTA
CTTAAACATTTTTATATAATAAATTTTATTATATTTATATATACAATATA
AATATATTATATAAAATATTATACTTATATATTATCTATTTAATATATGA
TATGCACAATATAATATATTTAAAATAGATACTATTTTATACACACACAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATATCCTGAATCTGTTCAGCATTGGAGTAAAACGTGGTATAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_l01.g1 MSMg01no533_l01.g1 CHROMAT_FILE:
MSMg01no533_l01.g1 PHD_FILE: MSMg01no533_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:58 2005
         (657 letters)



>mm_chr15_4151785_4152841
          Length = 1057

 Score = 1123 bits (581), Expect = 0.0
 Identities = 633/673 (94%), Gaps = 36/673 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctatctataccacccacccatgctgtactagtcctgagattaaagatgccaatcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcctatctataccacccacccatgctgtactagtcctgagattaaagatgccaatcacta 615

                                                                       
Query: 61  caatgacttttctgtgttttctttgtgccttctgggctcaaactaaggttatcaggcttg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 614 caatgacttttctgtgttttctttgtgctttctgggctcaaactaaggttatcaggcttg 555

                                                                       
Query: 121 caagtaacttaatgcactgagccatcatggcaccccaacattttttatttgattttaact 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caagtaacttaatgaactgagccatcatggcaccccaacattttttatttgattttaact 495

                                                                       
Query: 181 aatacaaaagagtaatgatggaatcttatatgttccttgtttaatttaattaaataacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aatacaaaagagtaatgatggaatcttatatgttccttgtttaatttaattaaataacat 435

                                                                       
Query: 241 ttcttgcttccctctcctttctccttacccttcctaccctctggtatctgcctaactctt 300
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcttgcttccctctcctttctttttacccttcctaccctctggtatctgcctaactctt 375

                                                                       
Query: 301 tcaaattcatacagcctccacttctgtaatatatatatatatatatatatatatata--- 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 374 tcaaattcatacagcctccacttctgtaatatatatatatatatatatatatatatatat 315

                                                                       
Query: 358 -------------tcaggatatcaatatatatgtataataaaaagtgtgtgcatatatgt 404
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atatatatatatctcaggatatcaatatatatgtataataaaaagtgtgtgcatatatgt 255

                                                                       
Query: 405 gtaaaagtactttttacttaaacatttttatataataaattttattatatttatatatac 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtaaaagtactttttacttaaacatttttatataataaattttattatatttatatatac 195

                                                                       
Query: 465 aatataaatatattatataaaatattatacttatatattatctatttaatatatgatatg 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aatataaatatattatataaaatattatacttatatattatctatttaatatatgatatg 135

                                                                       
Query: 525 cacaatataatatatttaaaatagatactattttatacacacacatagatagatagatag 584
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 134 cacaatataatatatttaaaatagatactattttatacacacac---------------- 91

                                                                       
Query: 585 atagatagatagatagatagatagatagatagatagatagatagatatcctgaatctgtt 644
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ----atagatagatagatagatagatagatagatagatagatagatatcctgaatctgtt 35

                        
Query: 645 cagcattggagta 657
           |||||||||||||
Sbjct: 34  cagcattggagta 22



 Score = 62.6 bits (32), Expect = 1e-13
 Identities = 42/48 (87%), Gaps = 6/48 (12%)
 Strand = Plus / Plus

                                                           
Query: 329 atatatatatatatatatatatatatatatcaggatatcaatatatat 376
           ||||||||||||||||||||||||||||||    ||||  ||||||||
Sbjct: 303 atatatatatatatatatatatatatatat----atat--atatatat 344



 Score = 58.7 bits (30), Expect = 1e-12
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 329 atatatatatatatatatatatatatatat 358
           ||||||||||||||||||||||||||||||
Sbjct: 317 atatatatatatatatatatatatatatat 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 32
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)