BAC Information

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BAC

Clone NameMSMg01-534H08
Chromosome15 (Build37)
Map Location 83,096,761 - 83,097,351
singlet/doubletsinglet
Overlap genenone
Upstream geneSept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt
Downstream geneLOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534H08.T7 (MSMg01no534_h08.b1)MSMg01-534H08.TJ (MSMg01no534_h08.g1)
ACCAG602139AG602140
length881743
length of high quality
(start - end)		---588 (72 - 659)
definitionCHROMAT_FILE: MSMg01no534_h08.b1 PHD_FILE: MSMg01no534_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:59 2005CHROMAT_FILE: MSMg01no534_h08.g1 PHD_FILE: MSMg01no534_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTCCTTCNNCNACCACACACCCCCCCCCCCCCCCCTCTTNNNCCCCNN
NNNNNNNNNNNNNNNNNNNNNNGNNNNNAAGGNAACCCCAANGCCACGAG
AGNNNTCNNNNNNAAAAAGACAACGAAGCCCGNGNNNNTAAANNACAAAA
ACACCACCCCCCCCCCCNGNCGNNNNNTCATCAACACGNNNNCCCCCTAC
NNTAAGNCTCCAACCAACCAAACAACCCCACCCACCTNTACNTNTNACAA
ACACACTTCCTCACCCCCATCTTCGGAGCAATTCACCACCCCCTCCCTCC
AGAAGGGATCCCCCTTNCCCTATATCNNNNCCCCCCCNNCNNCGTCCTCT
CCCCNNNCNNNNNTNCCCNCCCTCCCCNNCCCTTTCTTCCACCTCTTGTG
TTCCTTCTNCNTNNTCCCCCCCCCCNCNNNNNNNNCCTCTCGTGCTTTTT
NNNNNNNCCTTTTTTCTCCTNNNNTCNTNNCCCCCCCCCCCCTCCCTTCT
CCTCTTCTCTCCTCCCCCCCTCCTNCCTTACTTTTTTCACCCTTACCCTT
CTCCCCCCCTCCCCCCATCCTCTTCCCCCTCCCCCCTCCTCCCTTCNTTG
TTACATCATTCTCCCACCCCGCCCCTCTCCACTCCTCCTCAATATCCAAC
ATCACGCTCCATTACATCACTTCATCCCCCCCACCCCCCCCCTTTTCTTC
TTTCACTCCTTTCCTTTCTTTCCTACCATCATCTCATCTTCTCAAATTCA
CCCTTCTCCACCCCCCCCCCCCCTCCTCCCCCACTTTTTCTTACCCCACC
TGCATCTACCTCTATCTCTTTCCCTACAATCCCTTCATCTAATACTCACA
CACTTTACTACCTCCCTCTCCCACTGATATC

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCTTATTCA
AACATCAGCAGAAAAATTACATGTCCGTGCAGGGTGTCAGAGTTCTGTGA
GTTGTTGATTCAGTTTAGATAGCCCTGTTATGTCCTCACATTCCTCTTTA
TCTTTAAGGTTAAGCTGTTCCCAGGAATGTTTTAACTACGGGGGATACCC
AGGTTTGGTTTTCTTTATTCTCAGCCCCAGGCAGTCTCTGGCTCACAAAA
AAACAGCAATTTCTGAGTACTTTATACGACTTACAGGTCTTGAAATTTCA
TCTTTCTTTCAGATGTAATATCTGCCAGTGTGCTTTGTACCTCTATGATC
CCAGGACTTGAAAGGTTAACGCAGAAGGGCCTTGACTGTAGAGCAAGTTT
ATAGTCAGTGTGGGCTATAATTGTAATGGTCTGATCTACTGCCCCAGAAT
AACTGTAGCCGTTTCATTCCATGCCTTCCAGCTATTTCATATTGCTGCTG
TAACAGGTCTGCCAGTCATTGACACAGAGAAGTGACCTGGCTCATGGGCG
TGCTGACCACACACACCCTGTTTTGTTCTTTATCTTCTGAATGTTCATTC
TGAGGTTTGCTAATCTTAAGAAATTCCACAAAGCTTTGCATATGACCTGT
CAAATTAAAGGTCATTATGAACTGGTATGTTCTAAAGGACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_h08.g1 MSMg01no534_h08.g1 CHROMAT_FILE:
MSMg01no534_h08.g1 PHD_FILE: MSMg01no534_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:59 2005
         (588 letters)



>mm_chr15_83096459_83097446
          Length = 988

 Score = 1033 bits (534), Expect = 0.0
 Identities = 576/592 (97%), Gaps = 5/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatagcgacacactattggcttattcaaacatcagcagaaaaattacatgtc----cg 56
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 893 agcatagcgacacactattggcttattcaaacatcagcagaaaaattacatgtccggacg 834

                                                                       
Query: 57  tgcagggtgtcagagttctgtgagttgttgattcagtttagatagccctgttatgtcctc 116
           | ||||||||||||||||||||||||||||| |||||| || |||||||||||||| || 
Sbjct: 833 ttcagggtgtcagagttctgtgagttgttgactcagttcaggtagccctgttatgt-ctt 775

                                                                       
Query: 117 acattcctctttatctttaaggttaagctgttcccaggaatgttttaactacgggggata 176
           | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 774 aaattcctctttatctttaaggttaagctgttcccaggaatgttttaactatgggggata 715

                                                                       
Query: 177 cccaggtttggttttctttattctcagccccaggcagtctctggctcacaaaaaaacagc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cccaggtttggttttctttattctcagccccaggcagtctctggctcacaaaaaaacagc 655

                                                                       
Query: 237 aatttctgagtactttatacgacttacaggtcttgaaatttcatctttctttcagatgta 296
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aatttttgagtactttatacgacttacaggtcttgaaatttcatctttctttcagatgta 595

                                                                       
Query: 297 atatctgccagtgtgctttgtacctctatgatcccaggacttgaaaggttaacgcagaag 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 594 atatctgccagtgtgctttgtacctctatgatcccaggacttgaaaggttaatgcagaag 535

                                                                       
Query: 357 ggccttgactgtagagcaagtttatagtcagtgtgggctataattgtaatggtctgatct 416
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ggccttgactgtatagcaagtttatagtcagtgtgggctataattgtaatggtctgatct 475

                                                                       
Query: 417 actgccccagaataactgtagccgtttcattccatgccttccagctatttcatattgctg 476
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cctgccccagaataactgtagccgtttcattccatgccttccagctatttcatattgctg 415

                                                                       
Query: 477 ctgtaacaggtctgccagtcattgacacagagaagtgacctggctcatgggcgtgctgac 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgtaacaggtctgccagtcattgacacagagaagtgacctggctcatgggcgtgctgac 355

                                                               
Query: 537 cacacacaccctgttttgttctttatcttctgaatgttcattctgaggtttg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cacacacaccctgttttgttctttatcttctgaatgttcattctgaggtttg 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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