BAC Information

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BAC

Clone NameMSMg01-534H10
Chromosome15 (Build37)
Map Location 79,800,571 - 79,801,223
singlet/doubletsinglet
Overlap genenone
Upstream geneTriobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7
Downstream genePdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534H10.T7 (MSMg01no534_h10.b1)MSMg01-534H10.TJ (MSMg01no534_h10.g1)
ACCAG602143AG602144
length748754
length of high quality
(start - end)		658 (40 - 697)521 (69 - 589)
definitionCHROMAT_FILE: MSMg01no534_h10.b1 PHD_FILE: MSMg01no534_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:59 2005CHROMAT_FILE: MSMg01no534_h10.g1 PHD_FILE: MSMg01no534_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAATTCTGGCGATAACTACAAGGAGGATGAGGGGCAAAGGACAAGGGAGG
GGTAATCTCAGACTATACCTTGCACTTGCAGACTAGGCAGAGAACACGCA
TCCAGGTCAGGGTGTGTTCCACATGGTCTACGGGGATATCCAGGGGGGCC
AAAATAGCGGCCTACTCCCAAAATTGGTCCAGGTTGTGAGTCTTAACCTT
AAGAGCACAATTAACCAGAGTGTTTTCAATGCCCTGAACCAATGCCTGGG
GTTCCTTGATGGCGAAGACAAGGGAACCCATGGCGGGGAAACCCATGTTG
AGAGAAACCATAACGACGAGCCCAAAGGAAACAAACAAGGAATGATATGA
CAGAGAAGGCGACGGAGGGACTATGCCTGCGTAGTGTCTCTGGATTGGAA
AAGGTCTTTGGCAGCCAATCTGACTGGGCGACTAGGCCCTGTGTCAAGTA
CCAGGATGAATCCAAACCAAAAGGGAAGCCGAGCAGACAAAGACAAAAGT
CAGAAAAGATGGCGGCCGAGGCGGCGCCCATTCAAAGGCAAAAAAAGAAA
AGATGGCCGCCGCTGCCACACCCTCACCCTCAAACAGAGACCAAGAGTGA
GAACCGGGAGGAACAGATAAAATCGGGAAGAACAGACAAAATAGACTAAA
TCGACTGAGAAGAGATCCACGCATCCACACTCGCAAGACACACAACAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGACCAGCCTGGTCTACACAGAGAAACCCTG
TCTCAAAAAAACCAAAAAAATAACAAAAACACAAAGTTAAAAGGTGCTGG
AGAGACTCCTGTAAGAGCCCTTGCTGCTCTTCCAGAGGACCGGTAATGGT
ACTCAATTCCCAGCACCCAGGTTAGGAGGCTCACGCCTCTAACTCCAGTT
CCAAGGGTTTAAATGATCTCTCCCTCCTCTGTCCCCTGCACAAATATGCA
CACATAGACACATACACATTTTAAAAAATGAAATGAAAATTTAAAATATT
TAAAGGAGGCTGAGGATGTAGCTGATGGTGGGCTTGCCTGGCACGAGTGA
CGTCCTGAGTTCCACCACTGTTACTGAATAAAGCCAGGTGTGGTAGCACA
GCCTAGAATCCCAGCACCAGAGGGAGACGGAGGCAGGACAATCAGTTCAA
GGTCATCCTCAGCTATGTATCAAGTTTGGGGCCTGGGCTATATAATAAGA
CCCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGNTTTCAAGACAGG
GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGC
TGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGAT
TAAAGGCGTGCGCCACCACGCCCGGCGACCCTATCTTTTTTAAACAGAAA
TGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_h10.b1 MSMg01no534_h10.b1 CHROMAT_FILE:
MSMg01no534_h10.b1 PHD_FILE: MSMg01no534_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:59 2005
         (658 letters)



>mm_chr15_79800367_79801424
          Length = 1058

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaattctggcgataactacaaggaggatgaggggcaaaggacaagggaggggt 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagactggcgataactacaaggaggatgaggggcaaaggacaagggaggggt 264

                                                                       
Query: 65  aatctcagactataccttgcacttgcagactaggcagagaacacgcatccaggtcagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 aatctcagactataccttgcacttgcagactaggcagagaacacgcatccaggtcagggc 324

                                                                       
Query: 125 gtgttccacatggtctacggggatatccaggggggccaaaatagcggcctactcccaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgttccacatggtctacggggatatccaggggggccaaaatagcggcctactcccaaaa 384

                                                                       
Query: 185 ttggtccaggttgtgagtcttaaccttaagagcacaattaaccagagtgttttcaatgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggtccaggttgtgagtcttaaccttaagagcacaattaaccagagtgttttcaatgcc 444

                                                                       
Query: 245 ctgaaccaatgcctggggttccttgatggcgaagacaagggaacccatggcggggaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaaccaatgcctggggttccttgatggcgaagacaagggaacccatggcggggaaacc 504

                                                                       
Query: 305 catgttgagagaaaccataacgacgagcccaaaggaaacaaacaaggaatgatatgacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgttgagagaaaccataacgacgagcccaaaggaaacaaacaaggaatgatatgacag 564

                                                                       
Query: 365 agaaggcgacggagggactatgcctgcgtagtgtctctggattggaaaaggtctttggca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaggcgacggagggactatgcctgcgtagtgtctctggattggaaaaggtctttggca 624

                                                                       
Query: 425 gccaatctgactgggcgactaggccctgtgtcaagtaccaggatgaatccaaaccaaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccaatctgactgggcgactaggccctgtgtcaagtaccaggatgaatccaaaccaaaag 684

                                                                       
Query: 485 ggaagccgagcagacaaagacaaaagtcagaaaagatggcggccgaggcggcgcccattc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaagccgagcagacaaagacaaaagtcagaaaagatggcggccgaggcggcgcccattc 744

                                                                       
Query: 545 aaaggcaaaaaaagaaaagatggccgccgctgccacaccctcaccctcaaacagagacca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaggcaaaaaaagaaaagatggccgccgctgccacaccctcaccctcaaacagagacca 804

                                                                
Query: 605 agagtgagaaccgggaggaacagataaaatcgggaagaacagacaaaatagac 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agagtgagaaccgggaggaacagataaaatcgggaagaacagacaaaatagac 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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