Query= MSMg01no534_h19.b1 MSMg01no534_h19.b1 CHROMAT_FILE:
MSMg01no534_h19.b1 PHD_FILE: MSMg01no534_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:01 2005
(607 letters)
>mm_chr15_98599011_98600017
Length = 1007
Score = 1151 bits (595), Expect = 0.0
Identities = 601/603 (99%)
Strand = Plus / Plus
Query: 5 gaattcaggaggacctgagttcagttctcagcatccattccaggcagtgcacaacaccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcaggaggacctgagttcagttctcagcatccattccaggcagtgcaaaacaccag 264
Query: 65 gggattcctgacgctcttctagatactcatatacgtgcacatatgcacatatatagttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggattcctgacgctcttctagatactcatatacgtgcacatatgcacatatatagttct 324
Query: 125 tttgatttttaaagatttatctgcttatataaatgttctgcccacatttatgtctgcgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgatttttaaagatttatctgcttatataaatgttctgcccacatttatgtctgcgta 384
Query: 185 ccacatgcatacctagtgcctctggaggtcagaatggggtatttgatcccttggaactgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacatgcatacctagtgcctctggaggtcagaatggggtatttgatcccttggaactgg 444
Query: 245 agttaaagactgttgtgaactgcccaactgtgagagctagaaatcaaacccaggtctcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttaaagactgttgtgaactgcccaactgtgagagctagaaatcaaacccaggtctcct 504
Query: 305 gcaagagcaacaagcactctacaccaagaagccatctccccaaacccctccctccccaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaagagcaacaagcactctacaccaagaagccatctccccaaacccctccctccccaaa 564
Query: 365 cttgtttgtctgtttctgttttttgagatagggtatctctatagagccctggttgttctg 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgtttgtttgtttctgttttttgagatagggtatctctatagagccctggttgttctg 624
Query: 425 gaactgactctgcagaccaagctggccttgaactcacagagatctgcctgtctctgcttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaactgactctgcagaccaagctggccttgaactcacagagatctgcctgtctctgcttc 684
Query: 485 ctgagttccacgatacctggcctcccacactaaaaaggtataatgtcaccatggagtact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgagttccacgatacctggcctcccacactaaaaaggtataatgtcaccatggagtact 744
Query: 545 gccatgatccaacagtcctcatggtccccttggtcctgtctcaccagataacctatcacc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gccatgatccaacagtcctcatggtccccttggtcctgtctcaccagataacctatcacc 804
Query: 605 tag 607
|||
Sbjct: 805 tag 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_h19.g1 MSMg01no534_h19.g1 CHROMAT_FILE:
MSMg01no534_h19.g1 PHD_FILE: MSMg01no534_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:01 2005
(564 letters)
>mm_chr15_98776333_98777296
Length = 964
Score = 484 bits (250), Expect = e-140
Identities = 301/332 (90%), Gaps = 26/332 (7%)
Strand = Plus / Minus
Query: 234 ttgagcctgagcagcagggac-cgagcaagcagggccaactggagtgagcagaggtccta 292
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 964 ttgagcctgagcagcagggacttgagcaagcagggccaactggagtgagcagaggttcta 905
Query: 293 aaaattcaattcccaacaaccacatgaaggctccaaccatctgtacagctacaatgtact 352
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 904 aaaattcaattcccaacaaccacatgaaggctccaac---ct-t-cagctacaatgtact 850
Query: 353 cacatacacaaacaaaataaataaatctttaaagagaaagagagagagagagagagagag 412
|||||||||||||||||||||||| |||||| ||||||||
Sbjct: 849 cacatacacaaacaaaataaataagcctttaa--------------------agagagag 810
Query: 413 agagagagagagagagagagagagagagagcaagcaaaaacaaaacatgaagtgcacaaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 809 agagagagagagagagagagagagagagagcaagcaaaaacaaaacatgaaatgcacaaa 750
Query: 473 aacaggcttaccaaatgaacgtaggaaagggatttgtagagaggagcagggctttgcagg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aacaggcttaccaaatgaacgtaggaaagggatttgtagagaggagcagggctttgcagg 690
Query: 533 gctgggaggaaaggagatgtgagaagaggatt 564
||||||||||||||||||||||||||||||||
Sbjct: 689 gctgggaggaaaggagatgtgagaagaggatt 658
Score = 105 bits (54), Expect = 1e-26
Identities = 109/130 (83%), Gaps = 8/130 (6%)
Strand = Plus / Minus
Query: 110 gtcctgagttcaaatcccagcaaccacatggcggctcacaaccatctgtaatgag-atct 168
||||||||||||||||||||||||||||||| ||||||||||||||||||| | | | |
Sbjct: 459 gtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacggggaccg 400
Query: 169 gatgccctcttctggtgtgtctgaagagagcaacagtgtact----tatgtataataata 224
||||| || |||||||||||||||| ||| | |||||||| ||| |||| ||||
Sbjct: 399 gatgcattcctctggtgtgtctgaagtcagcgatagtgtactcacatat--ataa-aata 343
Query: 225 aataaatctt 234
|||| |||||
Sbjct: 342 aatacatctt 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
