BAC Information

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BAC

Clone NameMSMg01-534P01
Chromosome15 (Build37)
Map Location 7,763,891 - 7,764,052
singlet/doubletsinglet
Overlap geneGdnf
Upstream geneOsmr, Lifr, Egflam
Downstream geneWdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P01.T7 (MSMg01no534_p01.b1)MSMg01-534P01.TJ (MSMg01no534_p01.g1)
ACCAG602507AG602508
length724760
length of high quality
(start - end)
549 (42 - 590)165 (73 - 237)
definitionCHROMAT_FILE: MSMg01no534_p01.b1 PHD_FILE: MSMg01no534_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:36 2005CHROMAT_FILE: MSMg01no534_p01.g1 PHD_FILE: MSMg01no534_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTTTTTGTCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGTGCTATCTAAACTGGTTTCCAGGGAATAAAAGCCAGGCAGTGGTC
CTCATCCTTCCTGATGCTGTGATCCTTTAGTGCAGTTCCTCAGGTTGTGG
TGACCCCCAAACCATAAAATTATTTTCGTTGCTATTTCATGTCTGTAATT
TTGCTACTGTTATGAATTTTAATGTAGATATTTTGGAAGTTAGAGGTTTG
CCAAAAAGGGTCATGACTCACAGGTTATATGTTCAGGCATACATGTGTGT
AGGGACAAGCATGTGTGTGCATGCATGGGGAGGCCAGAAGATAACTTCAG
GGTTATCCTTGAAGGTTGACCTCGTCAGGGTCTCTCATTGGCCAGCAGCT
TGCCAAGTAAACTAGGTTGGCTGGCCAGTAACCCCAAAGGATCTGTTGCC
TCCACTTCCCCAATGCTGGGATTACAAGTGAGCAGCACTGAGCCCCTACT
CCATGTGCATTTTAAGGGCCGAGCTTGGGTCCTTACATTTTCACAACATG
CATTCTGTTGACTAAACCAGCTCCCCATGCCAAGCCATAAGCAATGCTCA
GTCATAGTGAAAGAAGTAGATGTGGCATAACTGGCCATAGAACAGGAGGG
AAGAGCATGGGGGAAGAATCCACCCAGAGTGCTCTGAGGACAGAGACAAA
AACCACCAGTGACGCATGAGGAAN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTCCATCCCTTGGGCGTCTGTTTTC
TCCGCAGCTGTTGGGTTCGGAGATTGGGAAGCGACGGAACCACACAGCTC
CGGGGTTCCGGCTGCGCGGGCTGGCTCGAACACCCCAGAGGAGGGGGAAA
AAAAAAGACTCCCCTGGCTCCCGCCCCTCACGCANGCAGTGGCAGAAGAG
GCTGCTTCGCTGAGCGGGGAAGCGGGGGGTGGGGTGGTGAAGGCAAAGGC
CCTCCGGGGGTGGCTACGCTTTTGGCCAGTTTTTTCTGGGGGGGCGTGGG
AAAAATGGGCGGGGAAGATCCCCCCAAAGGGCACCTGTAAGACCTCCGGG
GTTTTTAAAAGGGGCGGGGTTCCCCCGGGAAAATCCCCGCGGTGCCTCTC
CTTTTTGCGTTTTTTTTTTCTATTTTAAAGCGTCCTTACGTCTTTCTATC
TCCCCTTCTATTCCCTCTTATAATTTTCCTTTATTGCCCTTTTTCTTCTC
TCCCTTTTTCGTCTGCCTAGTACGTCACGGGTATTTCCATCTCTCCTCCC
TCTTCCTCGCGTCCACCCTTTTTTTTGCCGGGCCGTTCGTCTGTCTTGTA
GTATATTTTTTTTAGATAGACGTTCGAACCCGACTACGTTCGCTTTCGTG
CGCTTTTTGTTTGTATGCCCCTATCAATACTGCCTCGCGCTCTTCCATTT
CCACCTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p01.g1 MSMg01no534_p01.g1 CHROMAT_FILE:
MSMg01no534_p01.g1 PHD_FILE: MSMg01no534_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:36 2005
         (165 letters)



>mm_chr15_7763691_7764255
          Length = 565

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttccatcccttgggcgtctgttttctccgcagctgttgggttcggagattgggaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 attttccatcccttgggcgtctgttttctccgcagctgttgggttcggagattgggaagc 303

                                                                       
Query: 61  gacggaaccacacagctccggggttccggctgcgcgggctggctcgaacaccccagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gacggaaccacacagctccggggttccggctgcgcgggctggctcgaacaccccagagga 243

                                                     
Query: 121 gggggaaaaaaaaagactcccctggctcccgcccctcacgca 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gggggaaaaaaaaagactcccctggctcccgcccctcacgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)