Query= MSMg01no535_b15.b1 MSMg01no535_b15.b1 CHROMAT_FILE:
MSMg01no535_b15.b1 PHD_FILE: MSMg01no535_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:49 2005
(715 letters)
>mm_chr15_30319994_30321108
Length = 1115
Score = 1323 bits (684), Expect = 0.0
Identities = 706/714 (98%), Gaps = 4/714 (0%)
Strand = Plus / Plus
Query: 5 gaattcatggagctggagggcttaagtgacttcaagacattcactgtaatgtttttaggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggagctggagggcttaagtgacttcaagacattcactgtaatgtttttaggg 264
Query: 65 ctttgacaaagatgagggatgtcaggatttttcagtttagcgagtttccgactgactatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgacaaagatgagggatgtcaggatttttcagtttagcgagtttccgactgactatg 324
Query: 125 gcaatgcccatggctcttgaagccaggaaataagagctttgcaataatggattgggttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaatgcccatggctcttgaagccaggaaataagagctttgcaataatggattgggttta 384
Query: 185 gttgttggctctctataatttgacttgacagaatctgacccactctgaatagcagataga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgttggctctctataatttgacttgacagaatctgacccactctgaatagcagataga 444
Query: 245 ctcagaatgcccaataccacggcacatccctgatctgtagaagctgtgttgttacagatg 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 ctcagaatgcccaataccacggcacatccctgatgtgtagaagctgtgttgttacagatg 504
Query: 305 gattcattccttttactaggtgagctacgtagtgagagggagtatttgccaatcaaatat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattcattccttttactaggtgagctacgtagtgagagggagtatttgccaatcaaatat 564
Query: 365 ttaatggcgagtaatgtttaagcatacaagaatacttatataactcagtacattcgttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaatggcgagtaatgtttaagcatacaagaatacttatataactcagtacattcgttaa 624
Query: 425 caactcaactaaaagaagacactctttttttccccc--tcagagaacacatataaataaa 482
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 caactcaactaaaagaagacactctttttttccccccctcagagaacacatataaataaa 684
Query: 483 tggcttatcaaaaagtgctcaacactgttcatcatcaaaggcatgcacttcaaagctatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggcttatcaaaaagtgctcaacactgttcatcatcaaaggcatgcacttcaaagctatt 744
Query: 543 atgacatatttcttcatacctgatgataaaggctattata-aaagagtcagatgataagt 601
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 745 atgacatatttcttcatacctgatgataaaggctatta-acaaagagtcagatgataagt 803
Query: 602 gttggcaagagtgtgacgaagaggatcactgtgtagtgatgtgatgaagcaatagagcca 661
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gttggcaagagtgtgaagaagaggatcactgtgtagtgatgtgatgaagcaatagagcca 863
Query: 662 ttatgcaataccgtacgtcagttctcccaaaaactaaaaaccatcatattttac 715
||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttatgcaatactgtacatcagttctcccaaaaactaaaaaccatcatattttac 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_b15.g1 MSMg01no535_b15.g1 CHROMAT_FILE:
MSMg01no535_b15.g1 PHD_FILE: MSMg01no535_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:49 2005
(634 letters)
>mm_chr15_30490716_30491749
Length = 1034
Score = 1208 bits (625), Expect = 0.0
Identities = 631/633 (99%)
Strand = Plus / Minus
Query: 2 cctgacccttcagtactcacctataattactcagacaatttagtatgcaccatgtaacgt 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 836 cctgacccttcagtactcacctataattactcagacaatttagtatgcaccatgcaacgt 777
Query: 62 gccatgtgagcactgtgtacaattacaatcaaattccagaataataatgaaagagagaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 776 gccatgtgagcactgtgtacaattacaatcaaattccagaataataatgaaagagaggaa 717
Query: 122 ttattattattataattattattattcatatttttaggtgagcagaagggaggctctttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttattattattataattattattattcatatttttaggtgagcagaagggaggctctttt 657
Query: 182 gggccaggaaactgagcaaacctaccactttagagatgaagcagagatgatgagaaaact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gggccaggaaactgagcaaacctaccactttagagatgaagcagagatgatgagaaaact 597
Query: 242 tcacctataaaaatgccacatcgccatgaagttgacagtctttcaccatgagaccacaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcacctataaaaatgccacatcgccatgaagttgacagtctttcaccatgagaccacaag 537
Query: 302 ttgctatttctgtgatcatcacacttatttcatatcatatctacccatagacaatcattt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttgctatttctgtgatcatcacacttatttcatatcatatctacccatagacaatcattt 477
Query: 362 ggcagaacaagagacatgaaataatttcacatgataattttggaaataatttaacatata 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggcagaacaagagacatgaaataatttcacatgataattttggaaataatttaacatata 417
Query: 422 gatcaaagcaattaacatggtaaagtacaatatgagaataacgtattttatttactttaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gatcaaagcaattaacatggtaaagtacaatatgagaataacgtattttatttactttaa 357
Query: 482 aatgactaatttatcttactttatgtctatgtgtgagtgtccccatgtatgtctgtacac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatgactaatttatcttactttatgtctatgtgtgagtgtccccatgtatgtctgtacac 297
Query: 542 catgtgcatacctggtgcccacagatgtcagaagacagcattgcatgtcacagagctgga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 catgtgcatacctggtgcccacagatgtcagaagacagcattgcatgtcacagagctgga 237
Query: 602 gttggggcaattgccagcctccatgtgggtgtt 634
|||||||||||||||||||||||||||||||||
Sbjct: 236 gttggggcaattgccagcctccatgtgggtgtt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
