Query= MSMg01no535_p24.b1 MSMg01no535_p24.b1 CHROMAT_FILE:
MSMg01no535_p24.b1 PHD_FILE: MSMg01no535_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:59 2005
(586 letters)
>mm_chr15_90173783_90174770
Length = 988
Score = 1052 bits (544), Expect = 0.0
Identities = 574/584 (98%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgctgttttaggaagataaaagaaatgtgggaatcatgttggctcacatcagt 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gaattcttgctgttagaggaagataaaagaaatgtgggaatcatgttggctcacatcagt 729
Query: 65 actggaataaagtagcaagcagaaggaatcaatcattaaacataaattaatcattaacta 124
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 actggaataaaatagcaagcagaaggaatcaatcattaaacataaattaatcataaacta 669
Query: 125 aacgttatttggtcagctgttagctattccaatcaggtgaattagctaagatcctggcct 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 668 aacgttatttggtcagctgttagctattccaagcaggtgaattagctaagatcctggcct 609
Query: 185 gaaagtcatcaccctccaatgggaagttccatgcagatgatataaatagaacaagagtta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaaagtcatcaccctccaatgggaagttccatgcagatgatataaatagaacaagagtta 549
Query: 245 aaatttaagagttgtgtccttggaagtttatttcttgttctggctaatggctttttgggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaatttaagagttgtgtccttggaagtttatttcttgttctggctaatggctttttgggt 489
Query: 305 ccaaatttccagtttatagttctctaaccaaaagatatggaaagtaa-aagaaatgatcc 363
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 488 ccaactttccagtttatagttctctaaccaaaagatatggaaagtaagaagaaatgatcc 429
Query: 364 aaaatcaccaaaattcacagtga-gaaaaaaaatcttaagctgtcttcttcctcagaaga 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaatcaccaaaattcacagtgaggaaaaaaaatcttaagctgtcttcttcctcagaaga 369
Query: 423 aacttaacaggactcctctggtagacccagtagttcctggaataaatgggttaccattct 482
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 368 aacttaacaggactcctctggtagacccagtagttactggaataaataggttaccattct 309
Query: 483 atgcttcatgctcttgtcacatgataagcattttttctactgattatactgaaataagaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgcttcatgctcttgtcacatgataagcattttttctactgattatactgaaataagaa 249
Query: 543 ccagactggcaggcttcttcacagatgctagccactgccagaca 586
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccagactggcaggcttcttcacagatgctagccactgccagaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 988
Length adjustment: 10
Effective length of query: 576
Effective length of database: 978
Effective search space: 563328
Effective search space used: 563328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_p24.g1 MSMg01no535_p24.g1 CHROMAT_FILE:
MSMg01no535_p24.g1 PHD_FILE: MSMg01no535_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:59 2005
(520 letters)
>mm_chr15_89989789_89990705
Length = 917
Score = 847 bits (438), Expect = 0.0
Identities = 482/500 (96%), Gaps = 7/500 (1%)
Strand = Plus / Plus
Query: 21 cagtaccaggtaggagaaactccttttcaaattgttggtcaggggaattcaagagaattc 80
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 225 cagtaccagataggagaaactccttttcaaattgttggtcaggggaattcaagaggattc 284
Query: 81 cagaacaatacaggttattgtcattgcctctggttgtctctcagatgtccatatcgttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagaacaatacaggttattgtcattgcctctggttgtctctcagatgtccatatcgttga 344
Query: 141 tggcatcatgaatttcagacacgggactaaaaggatctgagctagatctggcctgaaagc 200
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 345 tggcttcatgaatttcagacacaggactaaaaggatctgagctagatctggcctgaaagc 404
Query: 201 ctcctcactgaggacaagctgatataactgggaggtgctatgccagcaacccaggaagag 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctcctcactgaggacaagctgatataactgggaggtgctatgccagcaacccaggaagag 464
Query: 261 aagccagcaagagtcttacttacgtagctgtaaagccgaagtacaacggcaacggtatct 320
|||||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct: 465 aagccaacaagagtcttacttacgtagctgtaaagccaaagtacaacagcaacc----ct 520
Query: 321 tttgttctcatttaggatctttcaaggatcttttgattaagctctttgtacattttctac 380
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 521 cttgttctcatttaggatctttcaaggatctgttgattaagctctttgtacattttctac 580
Query: 381 cttctttctaccaacagtcatagctttctttataagtacaaatgtgtgtgtgtgtggggg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cttctttctaccaacagtcatagctttctttataagtacaaatgtgtgtgtgtgtggggg 640
Query: 441 gggggtgtatacacctgcatatgcgtgcctatagaagtcaaaagataatattgtttcccc 500
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gg---tgtatacacctgcatatgcgtgcctatagaagtcaaaagataatattgtttcccc 697
Query: 501 taaactacaagcagttgtga 520
| ||||||||||||||||||
Sbjct: 698 tgaactacaagcagttgtga 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 917
Length adjustment: 10
Effective length of query: 510
Effective length of database: 907
Effective search space: 462570
Effective search space used: 462570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
