NAAATATTTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTAGCAGTTGTATTTCAAGTCGGGATGTTTGATTTA
GTACCTTGAAACATTTTTGAAAAATAAAATTTCAATCACAAAACAAGTAG
CAAAAAATCCTTGAGATTTTAAAATGGGTTTTGTTCTTAATATTTTTCCG
AATGACTTAGGCATATGATGGTCAATCTATCAAATATAGCTTTGTAAGTG
GAAACACAGGCAGATGGGAACTAAGTTTGTTTGAATATTCCAAATTTTAT
ACCCTTACATCCTAGGATAATATATTTTGAAAGTTTCCTTTTTGTTCTGT
CCAACATTTATAAGTGCAAGATATATTATTAGTACAAGATCTTGATATTA
CAGGTCATTTTGAATTAAGAGATATATGATATATACCTACTGAAGCCTAT
CACCTTACTAAATTAAACTAGAAATCCAAACAACTCTTGTGTTAGTCTGG
GGAGATTTTTTACCATATTTATTGGATGGCTGTCATGGCAGGTAGTTCAT
TCAAAAGAACTTTCACATACTATTTCATTTATTTGATGAGGACACTGGAG
TCCAGTGTAATCCAGATTCCAGATCTGAGTTTCTAAGCAAAGACTTTCTT
TGAGTCCACAAATTTGCACAGTAATCTGAGAAGCTGCACTCTAGTAATTA
TTGGAAAGCTCAACATTCAGACATGAAATTTTTTAAAAGATATTGCTATT
ATTTCTCTACCTGCACTGACTGG

NNNAAAAAANCCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATAATCA
GGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGA
ATGGCTAAGGTCAAAACTTCAGGTGACAGCAGATGCTGGCGTGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAAC
CACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCC
AACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCGGCCTTATTTA
TAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGG
ATACAGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAA
AAAGAATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCA
TCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTAC
TCACTGATAAGTGGATATTAGCCCAAAACCTAGATACCCNAGATATAAGA
TACNATTTCCCTAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTG
ACACTATGCCCCTCCT

Query= MSMg01no536_d21.b1 MSMg01no536_d21.b1 CHROMAT_FILE:
MSMg01no536_d21.b1 PHD_FILE: MSMg01no536_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:17 2005
         (562 letters)



>mm_chr15_42343701_42344662
          Length = 962

 Score = 1023 bits (529), Expect = 0.0
 Identities = 529/529 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagcagttgtatttcaagtcgggatgtttgatttagtaccttgaaacatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagcagttgtatttcaagtcgggatgtttgatttagtaccttgaaacatttt 264

                                                                       
Query: 65  tgaaaaataaaatttcaatcacaaaacaagtagcaaaaaatccttgagattttaaaatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaaaaataaaatttcaatcacaaaacaagtagcaaaaaatccttgagattttaaaatgg 324

                                                                       
Query: 125 gttttgttcttaatatttttccgaatgacttaggcatatgatggtcaatctatcaaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttttgttcttaatatttttccgaatgacttaggcatatgatggtcaatctatcaaatat 384

                                                                       
Query: 185 agctttgtaagtggaaacacaggcagatgggaactaagtttgtttgaatattccaaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctttgtaagtggaaacacaggcagatgggaactaagtttgtttgaatattccaaattt 444

                                                                       
Query: 245 tatacccttacatcctaggataatatattttgaaagtttcctttttgttctgtccaacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatacccttacatcctaggataatatattttgaaagtttcctttttgttctgtccaacat 504

                                                                       
Query: 305 ttataagtgcaagatatattattagtacaagatcttgatattacaggtcattttgaatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttataagtgcaagatatattattagtacaagatcttgatattacaggtcattttgaatta 564

                                                                       
Query: 365 agagatatatgatatatacctactgaagcctatcaccttactaaattaaactagaaatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagatatatgatatatacctactgaagcctatcaccttactaaattaaactagaaatcc 624

                                                                       
Query: 425 aaacaactcttgtgttagtctggggagattttttaccatatttattggatggctgtcatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaacaactcttgtgttagtctggggagattttttaccatatttattggatggctgtcatg 684

                                                            
Query: 485 gcaggtagttcattcaaaagaactttcacatactatttcatttatttga 533
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaggtagttcattcaaaagaactttcacatactatttcatttatttga 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)