BAC Information

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BAC

Clone NameMSMg01-537E09
Chromosome15 (Build37)
Map Location 77,955,093 - 77,955,535
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2
Downstream geneRabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537E09.T7 (MSMg01no537_e09.b1)MSMg01-537E09.TJ (MSMg01no537_e09.g1)
ACCAG604284AG604285
length765793
length of high quality
(start - end)
446 (77 - 522)248 (80 - 327)
definitionCHROMAT_FILE: MSMg01no537_e09.b1 PHD_FILE: MSMg01no537_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:36 2005CHROMAT_FILE: MSMg01no537_e09.g1 PHD_FILE: MSMg01no537_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAGCTTTGCCCATGGCCAGCCACAGCAGAAGACAAACCAA
TAGGTGAGTGAGAGGCTCTTGGCTACAGGTATCACCCATTGGCTTTATTG
TTCTCAACCAGGAGGAAGCTGGAAGGTGGGAAAGAAGAGGTGTGGAGCTA
GCTGCATCTGGCCCGGACTCCAGTTCTGATGCCTATTTGCTGTGTGGTCC
CATGCAGGGATTTGACCTCTCTGGGCTCAGCCTCATCTGTAAGTGGGAAG
GGGGCTCTCTCTTATCCCCAGTATGTGTCGTTTCCTTCCAAATGTATCGT
TCAGGTCTTGGCATCGGTTTCTCTCCCCTCCAGGAAGGTGTAATCTCGCA
CTTAAGTAAGTGGCCACGGATACCGAGGCCTGTTTTGTCTCCACTGTGCT
GATTGTTGCAGACTGACACACTCTCACTCACGATCTGAAGTATCTCCTGC
CTGACTTTCTTCTCTGGATGTCAAATCCTGTCTCTTGTCCTTTGTGGAAG
CCCTGGCCCCTAAGAAGTTGCTAGAGCATGGATTTTTTTGAGTGACTACT
TTTTATGAGGCCTGGAAGTGTGCTGGTGGCTCCTTAGGAACTGGTCCAAA
ATGGTCCAAGGGCATTCCTAAGTTCCAAATCCTGCGGCCCAGACTTATGG
CCACCACTGGGGGTGGGGGCGGAATGCCCTTTCCTTGGGGGCCTCCCTGA
AATACGGGAAAGGCN
NCCCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGAAGATGAGATGGAAGA
CAGAGGGGAGAGAGGAGAAAAGGATGAGGAGGGGGAGGAGAAGGAAGGGG
GAAGGAGGGCGAGATAGAGGAAGGAGAAGGGAACATGGAAATGGAGGAAG
ATGAAAAGGAGGGTGAGGAGGAGGAGGAGCTGAAGAAGTGATTGGGTTCT
CCTAGCAGTGCCTGAGAGACAGATAGGACATGTCCCACACCTCACAAAGT
ATGGGATCCCTATGAGCCCACACACCCTGCTCATAGTCCATGCTGGTTCT
CTGGTCCCCTGGGACCTGTTCTGTCCCAGGATGGTGTATCTGGATTCAGA
AGCCACCAGGCAGTGACTGGGGAACCCAGCATACCTTCATGGGCTGTCCC
CCAGGCTGGGGCACCTCCGTGGTCACTGGGCCCTTCCCACTCGCTTTTCA
ACATGTTCCATGTATGACCTCTCCTGAAAGAGTGTCCCCCCCCATATTTC
CCTCATATGCTGTTTTTGCGTCCTGCCGTGTTTTTCTAACGCCATTAACA
TCCCCCTTCGCCTCTCTTCTTAATTTTGCCGCATATTTTATCGTCATGAA
AATGGCTTCTCATCACCACCCTGCTATTCTGTCCCCCCTTACTCCTCTTG
CACCATTTGACCCCCTCCCTCTTCCTCTTCTGTGTTGATACCCAACGCTT
CTCCCTACTGCGCTTTATTTGTTCATCTTTTTCTCTTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_e09.b1 MSMg01no537_e09.b1 CHROMAT_FILE:
MSMg01no537_e09.b1 PHD_FILE: MSMg01no537_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:36 2005
         (446 letters)



>mm_chr15_77954890_77955735
          Length = 846

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/443 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ccacagcagaagacaaaccaataggtgagtgagaggctcttggctacaggtatcacccat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccacagcagaagacaaaccaataggtgagtgagaggctcttggctacaggtatcacccat 263

                                                                       
Query: 64  tggctttattgttctcaaccaggaggaagctggaaggtgggaaagaagaggtgtggagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggctttattgttctcaaccaggaggaagctggaaggtgggaaagaagaggtgtggagct 323

                                                                       
Query: 124 agctgcatctggcccggactccagttctgatgcctatttgctgtgtggtcccatgcaggg 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctgcatctggcccagactccagttctgatgcctatttgctgtgtggtcccatgcaggg 383

                                                                       
Query: 184 atttgacctctctgggctcagcctcatctgtaagtgggaagggggctctctcttatcccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 atttgacctctctgggctcagcctcatctgtaagtgggaagggggctgtctcttatcccc 443

                                                                       
Query: 244 agtatgtgtcgtttccttccaaatgtatcgttcaggtcttggcatcggtttctctcccct 303
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 444 agtatgtgtcgtttccttccaagtgtatcgttcaggtcttggcatcagtttctctcccct 503

                                                                       
Query: 304 ccaggaaggtgtaatctcgcacttaagtaagtggccacggataccgaggcctgttttgtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaggaaggtgtaatctcgcacttaagtaagtggccacggataccgaggcctgttttgtc 563

                                                                       
Query: 364 tccactgtgctgattgttgcagactgacacactctcactcacgatctgaagtatctcctg 423
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 tccactgtgctgattgttgcagactgacacactctcagtcacgatctgaagtatctcctg 623

                                  
Query: 424 cctgactttcttctctggatgtc 446
           |||||||||||||||||||||||
Sbjct: 624 cctgactttcttctctggatgtc 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)