BAC Information

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BAC

Clone NameMSMg01-537H08
Chromosome15 (Build37)
Map Location 66,308,796 - 66,309,365
singlet/doubletsinglet
Overlap geneLrrc6
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, LOC100040860
Downstream geneTmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537H08.T7 (MSMg01no537_h08.b1)MSMg01-537H08.TJ (MSMg01no537_h08.g1)
ACCAG604426AG604427
length751752
length of high quality
(start - end)
577 (73 - 649)620 (79 - 698)
definitionCHROMAT_FILE: MSMg01no537_h08.b1 PHD_FILE: MSMg01no537_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:50 2005CHROMAT_FILE: MSMg01no537_h08.g1 PHD_FILE: MSMg01no537_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGATGCATGCCGAATGGCTGAGAAGCACCTGAAAAAT
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACA
GCAGATGCTAGCGATGATGTGGAGAAAGAGGAACTCTCCTCAATTGTTGG
TGGGATTGCAAGTTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGGATGGACCTGAAGGGCATCATCCTGAGTGAGGTAACCCAATCACA
AAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTCGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAATTT
AAGAAGAACGAAGACCAAAGTGTGGACACTTTTGGCCTTCTTAGAAATGG
G
NCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCTGGGAAACTTCAAAAT
ATTTTTTTAACAAGTAAACAAAAACTAAGGTTTTTGCCAACAGAAGATCT
ACCATACAGAAATACATTAAATGGCATCTTTGAGGTTGAAAAGAAGACAT
GAAATGAAGATATGAAGATATTAGAATCAACGTATCAGCTGTTGTGGGTA
GGGCTTTTGCAGTCACAGTGGTAAACTCCAGGGCTATAAGCCACTGGGTG
GCTATTCAAGTGTCATTCAAGATACTCTGTCCTAACACACAGCCTGTTAC
CATACAGGGTTGGCAGTTGAGAAGCGTGGACAGGGCATACCAGGCAGTGT
GGACCAGCAGTGCAGAGCAGAAGAGTCGACTAGCAGTGTAGACTAGCAGT
GCAGAGCAGCAGTGTGGACAAGCAGTTTGGGCCATCAGTGTGGACCACCA
GTATAGACCAGCAGTGTAAACTAGCAGTGCAGAGCAGCAGTGTGGACCAG
CAGTGTGGACCAGCAGTTTAGACCAGCAGTGTAAACTAGCAGTGCAGAGC
AGCAGTGTGGACCAGCAGTGTGGACCAGCTGTGTAAACCAGCAGTGCGGA
CCAGTAGTGCAGAGCAGCAATGCAGACCAGCAGTGCAGACCAGCAGTGTG
GACCAGCAGTGTGGACCAGCAGTGCAGAGCAGCAGTGTAGACTAGCAGTA
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_h08.g1 MSMg01no537_h08.g1 CHROMAT_FILE:
MSMg01no537_h08.g1 PHD_FILE: MSMg01no537_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:50 2005
         (620 letters)



>mm_chr15_66308596_66309617
          Length = 1022

 Score =  845 bits (437), Expect = 0.0
 Identities = 537/571 (94%), Gaps = 4/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatctgggaaacttcaaaata--tttttttaacaagtaaacaaaaactaaggtttttg 58
           |||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||
Sbjct: 201 tttatctgggaaacttcaaaatatttttttttaacaagtaaacaaaaactgatgtttttg 260

                                                                       
Query: 59  ccaacagaagatctaccatacagaaatacattaaatggcatctttgaggttgaaaagaag 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ccaacagaagatctaccatacagaaatacattaaatggcatctttgaggttgaaatgaag 320

                                                                       
Query: 119 acatgaaatgaagatatgaagatattagaatcaacgtatcagctgttgtgggtagggctt 178
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 acatgaaatgaagatatgaagatattagaatcaatgtatcagctgttgtgggtagggctt 380

                                                                       
Query: 179 ttgcagtcacagtggtaaactccagggctataagccactgggtggctattcaagtgtcat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcagtcacagtggtaaactccagggctataagccactgggtggctattcaagtgtcat 440

                                                                       
Query: 239 tcaagatactctgtcctaacacacagcctgttaccatacagggttggcagttgagaagcg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaagatactctgtcctaacacacagcctgttaccatacagggttggcagttgagaagcg 500

                                                                       
Query: 299 tggacagggcataccaggcagtgtggaccagcagtgcagagcagaagagtcgactagcag 358
           |||||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||
Sbjct: 501 tggacagggcataccaggcagtgtggaccagcagtgcagagcaccagagttgaccagcag 560

                                                                       
Query: 359 tgtagactagcagtgcagagcagcagtgtggacaagcagtttgggccatcagtgtggacc 418
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 561 tgtagactagcagtgcagagcagcagtgtggacaagcagtgtgggccagcagtgtggacc 620

                                                                       
Query: 419 accagtatagaccagcagtgtaaactagcagtgcagagcagcagtgtggaccagcagtgt 478
           |||||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||
Sbjct: 621 accagtatagaccagcagtgtggaccagcagtgcagagcagcagtgtggaccagctgtgt 680

                                                                       
Query: 479 ggaccagcagtttagaccagcagtgtaaa-ctagcagtgcagagcagcagtgtggaccag 537
             |||||||||   |||||| |||| | | | |||| |||||| ||||||||  ||||||
Sbjct: 681 aaaccagcagtgcggaccagtagtgcagagc-agcaatgcagaccagcagtgcagaccag 739

                                          
Query: 538 cagtgtggaccagctgtgtaaaccagcagtg 568
           |||||||||||||| ||| | | ||||||||
Sbjct: 740 cagtgtggaccagcagtgcagagcagcagtg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space:   617320
Effective search space used:   617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)