Query= MSMg01no537_j13.b1 MSMg01no537_j13.b1 CHROMAT_FILE:
MSMg01no537_j13.b1 PHD_FILE: MSMg01no537_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:00 2005
(603 letters)
>mm_chr15_22324983_22325988
Length = 1006
Score = 1000 bits (517), Expect = 0.0
Identities = 580/603 (96%), Gaps = 6/603 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgaatatacaaatgatatctacttcaataataactacttctctcatcaaaat 64
|||||||||||||| | |||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 205 gaattcattgaatagaaaaatgatatctacttctataataactacttttctcaccaaaa- 263
Query: 65 tgtgggttttaattatcaatttgatgtaacttagatcaacctgaaacaaggctttctgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgggttttaattatcaatttgatgtaacttagatcaacctgaaacaaggctttctgaa 323
Query: 125 gtcttgctatatcaaattgtccagggattatgtccatggcaaattaccttgacttcttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcttgctatatcaaattgtccagggattatgtccatggcaaattaccttgacttcttta 383
Query: 185 agcgatgtgagaagacatagtctgagagtagaacattatttcctgttttg----atttgt 240
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 agcgatgtgacaagacatagtctgagagtagaacattatttcctgttttgctttgtttgt 443
Query: 241 tttaatttgtttgccaagaactgtataagagccttctgcttggcgtcagcatcaggtcac 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 tttaatttgtttgcctagaactgtataagagccttctgcttggcgtcagcatcaggttac 503
Query: 301 ctatggcacagagtcagcagacacccccaaggtccctagaggactattcctgcaatctta 360
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 504 ctatggcacagagtcagcagacacccccaaggtccctagaggaccattcatgcaatctta 563
Query: 361 ggatcactggtgagtggaacacaacattggttccaatccaattgcactgaacctgagaca 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggatcaccggtgagtggaacacaacattggttccaatccaattgcactgaacctgagaca 623
Query: 421 gcagtagggaagcagaaaagctgcctgaccaggggcacaagtcccttctagtctgcacca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 gcagtagggaagcagaaaagctgcctgaccaggggcacaagtcccttctagtctccacca 683
Query: 481 gcactaggtcaccaagggcatggaggcagcagacacccccatggtctccagaggactctc 540
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 684 gcactaggtaaccaagggcatggaggcggcagacacccc-atggtctccagaggactctc 742
Query: 541 cattcgatcttaggatcactgctgagtggaacacaacatcagttacaatccaattgcacg 600
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 catgagatcttaggatcactgctgagtggaacacaacatcagttacaatccaattgcacg 802
Query: 601 gga 603
|||
Sbjct: 803 gga 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space: 590628
Effective search space used: 590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_j13.g1 MSMg01no537_j13.g1 CHROMAT_FILE:
MSMg01no537_j13.g1 PHD_FILE: MSMg01no537_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:00 2005
(618 letters)
>mm_chr15_22428559_22429576
Length = 1018
Score = 1141 bits (590), Expect = 0.0
Identities = 611/618 (98%)
Strand = Plus / Minus
Query: 1 tttgactgaggcaaaattgccactgtatgctgcatgctcaagagaataactgtttgtgat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 818 tttgactgaggcaaaattgccactgtatgttgcatgctcaagagaataactgtttgtgat 759
Query: 61 taacttaaggaacctttcactctcctagtaatatttaggacatatgaactctgcataata 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 758 taacttaaggaacctttcactctcctagtaatatttagggcatatgaactctgcataata 699
Query: 121 ttactggtttatcatggttattctagcaaagcatcacatattaaggactgaatgcaaaag 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttactggtttatcatggttattttagcaaagcatcacatattaaggactgaatgcaaaag 639
Query: 181 aagaattccatatttaatgggttctggaaatgtagattccagccccctagagaactctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aagaattccatatttaatgggttctggaaatgtagattccagccccctagagaactctgt 579
Query: 241 gctttccctgttatgtcggcaacattgtccccttcttagctttaagtgaagcagaccaga 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gctttccctgttatgtcggctacattgtccccttcttagctttaagtgaagcagaccaga 519
Query: 301 actcatcttgaagaagtatcgcacctgtttctagtgttatttatacatgcatataaatac 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 518 actcatcttgaagaagtatcacacctgtttctagtgttatttatacatgcatataaatac 459
Query: 361 gtataaagtcaacttacattactaattacatctgaaacagatataagtttcaaaggaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtataaagtcaacttacattactaattacatctgaaacagatataagtttcaaaggaaga 399
Query: 421 caaataatgaatccccaaatatacagttagtaataaattttcactgtgaaataataatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caaataatgaatccccaaatatacagttagtaataaattttcactgtgaaataataatct 339
Query: 481 aaactccagcaagcctttatgtttattctcaagtatcttattaattgttcaaattgtata 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 338 aaactccagcaagcctttatgtttattctcaagtatctaattaattgttcaaattgtata 279
Query: 541 gtttgtgttcagtttacacaatatctcaattagattttaacattagtcctttgagtttgg 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 278 gtttgtgttcagtttacacaatatctcaattagattttaacattactcctttgagtttgg 219
Query: 601 agacaaatgtatttacag 618
||||||||||||||||||
Sbjct: 218 agacaaatgtatttacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
