Query= MSMg01no538_d20.b1 MSMg01no538_d20.b1 CHROMAT_FILE:
MSMg01no538_d20.b1 PHD_FILE: MSMg01no538_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:50 2005
(609 letters)
>mm_chr15_17657446_17658459
Length = 1014
Score = 1100 bits (569), Expect = 0.0
Identities = 597/609 (98%), Gaps = 5/609 (0%)
Strand = Plus / Plus
Query: 5 gaattcatctcacacttgagcttgcttcccagaacacatggggcttcccacaactactgg 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctcacacttgagtttgcttcccagaacacatggggcttcccacaactactgg 264
Query: 65 caactccaatgtcttggcactcaacacttctaatcatgacaagcacttcaatatatacac 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 caactccaatgtcttggcactcaacacttctaaccatgacaagcacttcaatatatacac 324
Query: 125 aacattggtgcacacagcacataaaaattaaaataatctctaatagcaaatcataacaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacattggtgcacacagcacataaaaattaaaataatctctaatagcaaatcataacaaa 384
Query: 185 tcgactaaatggcccagtgaattaagaaaagaagccaaaaaaag-----aaaaaaaaaaa 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 tcgactaaatggcccagtgaattaagaaaagaagccaaaaaaagaaaaaaaaaaaaaaaa 444
Query: 240 cattttctgaagactaacaaatataaatgggattttagaggagctaaaataacttcatat 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 cattttctgaagactaacaaatataaatggcattttagaggagctaaaataacttcatat 504
Query: 300 tacacccaccatagtgctaaatttattacttaatttgtaaatgggaaggcaacccaacca 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 tacacccaccatagtgctaaatttattacttaatttgtaaatgggaaggcaaaccaacca 564
Query: 360 aatgttaatgattaaaaatgggaaagaattatttttatggttccattaattcaagtaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgttaatgattaaaaatgggaaagaattatttttatggttccattaattcaagtaaat 624
Query: 420 gtcttgacgacttccaacaaaaaccatgaggcggttccagtgcattggatttcactatgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 gtcttgacgacttccaacaaaaaccatgaggcggttccagtgcattggatttcgctatgt 684
Query: 480 ttggtaattattttttgtttggttgtttcatgatatttgtttttatgaaagtaaattcct 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 ttggtaattattttttgtttggttgtttcatgatatttatttttatgaaagtaaattcct 744
Query: 540 gactctacagggtaatgaacaaagaagaaaaatatgtttgtttatttagaagcatcctag 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 gactctacagggtaatgaacaaagaagaaaaatatgtgtgtttatttagaagcatcctag 804
Query: 600 aaagaagtt 608
|||||||||
Sbjct: 805 aaagaagtt 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1014
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1004
Effective search space: 601396
Effective search space used: 601396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_d20.g1 MSMg01no538_d20.g1 CHROMAT_FILE:
MSMg01no538_d20.g1 PHD_FILE: MSMg01no538_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:50 2005
(481 letters)
>mm_chr15_17774025_17774905
Length = 881
Score = 907 bits (469), Expect = 0.0
Identities = 478/481 (99%), Gaps = 1/481 (0%)
Strand = Plus / Minus
Query: 1 ctccctctcacagaggtgaggggggagagagggattgggggaggggatagttggagaggc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctccctctcacagaggtga-gggggagagagggattgggggaggggatagttggagaggc 585
Query: 61 ttataagagagagggaactgcgattgtgatatgaagtgaatgaatgaatgaatgaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 584 ttataagagagagggaactgcgattgtgatatgaagtgaatgaatgaatgaataaataaa 525
Query: 121 taaataaataaataaataaataaataaataacagaaagttatacatattttcgagataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 taaataaataaataaataaataaataaataacagaaagttatacatattttcgagataaa 465
Query: 181 cacttgtccctggacaactcatttttgtgcttttccctgtagaatgacacctctttacct 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cacttgtacctggacaactcatttttgtgcttttccctgtagaatgacacctctttacct 405
Query: 241 tctcccagatttcctcagttacaaataaatttttgtacaatatggagacctcctgggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tctcccagatttcctcagttacaaataaatttttgtacaatatggagacctcctgggaag 345
Query: 301 ccaattttggtgagatttaacaagcatagcttttaattactcggggatataagctaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccaattttggtgagatttaacaagcatagcttttaattactcggggatataagctaacag 285
Query: 361 catagatcctgatccttgctgcttaaaatctttctgttccctcttcagcagtgtgctatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catagatcctgatccttgctgcttaaaatctttctgttccctcttcagcagtgtgctatg 225
Query: 421 gggcttaggtttaggaatgttttgtagctatataatttgggagtaggttacctctgcatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gggcttaggtttaggaatgttttgtagctatataatttgggagtaggttacctctgcatt 165
Query: 481 t 481
|
Sbjct: 164 t 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
