Query= MSMg01no538_l11.b1 MSMg01no538_l11.b1 CHROMAT_FILE:
MSMg01no538_l11.b1 PHD_FILE: MSMg01no538_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:26 2005
(706 letters)
>mm_chr15_22791753_22792858
Length = 1106
Score = 1309 bits (677), Expect = 0.0
Identities = 698/707 (98%), Gaps = 4/707 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgcccaatgttcataaaagtgtgacctcctatgacatagttagtccttatgt 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1086 ggaattcttgcccaatgttcataaaactgtgacctcctatgacatagttagtccttatgt 1027
Query: 64 tcatcaatggactttacgaagaagttctttccttttatgaaatcaaagaaccagttttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 tcatcaatggactttacgaagaagttctttccttttatgaaatcaaagaaccagttttaa 967
Query: 124 atttcatgttccttctagataccaacttttgtgaaagattctgatcaaattttttaacat 183
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 966 attttatgttccttctagataccaacttttgtgaaagattctgatcaaaatttttaacat 907
Query: 184 tcttgcacaataattgaatacattattgctatatttataggatttctgtctcagttatct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tcttgcacaataattgaatacattattgctatatttataggatttctgtctcagttatct 847
Query: 244 at----tatctatctatctatctatctatctatctatctatctatctatctcactattgg 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 attatctatctatctatctatctatctatctatctatctatctatctatctcactattgg 787
Query: 300 taaacattaattcagttttcagtcacaaaatctggtagtgcttttagatttgtttcttca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 taaacattaattcagttttcagtcacaaaatctggtagtgcttttagatttgtttcttca 727
Query: 360 tgttcatatctaattcgatagaactattttcaaagtacatagaactggataattactttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgttcatatctaattcgatagaactattttcaaagtacatagaactggataattactttc 667
Query: 420 catcatacctatcagcacatccatataaactttgccatgtttctattaccataatagaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 catcatacctatcagcacatccatataaactttgccatgtttctattaccataatagaaa 607
Query: 480 aacaaaatcaaaactgtaaaatgataacgtatttcaactgtttatctagatatcagaaaa 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 606 aacaaaatcaaaactgtaaaatgataacgtatttcaactgtttatgtagatatcagaaaa 547
Query: 540 aatctgaaatgaatgctgaaatcattttactttctcaaatagaatatgtaaaacatgact 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aatctgaaatgaatgctgaaatcattttactttctcaaatagaatatgtaaaacatgact 487
Query: 600 gaaggagaagaaggagtttgcaaccccataggaaaaacaacaatatcaagtaatcagatg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaaggagaagaaggagtttgcaaccccataggaaaaacaacaatatcaagtaatcagatg 427
Query: 660 gtcccagagctcccaggagctaaaccaccagccaaagagtacacatg 706
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 426 gtcccagagctcccaggagctaaaccactagccaaagagtacacatg 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no538_l11.g1 MSMg01no538_l11.g1 CHROMAT_FILE:
MSMg01no538_l11.g1 PHD_FILE: MSMg01no538_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:26 2005
(560 letters)
>mm_chr15_22749431_22750389
Length = 959
Score = 967 bits (500), Expect = 0.0
Identities = 543/558 (97%), Gaps = 3/558 (0%)
Strand = Plus / Plus
Query: 1 ctaagattttagagaaactgtaatcttatataatggccttatataatggctgagtttata 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctaagattttagagaaactgtattcttatataatggccttatataatggctgtgtttata 260
Query: 61 ttcttttgttttttttaactttggaagaattttattttaaggcatgttaaaaatgttaca 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttttg--ttttttaactttggaagaattttattttaaggcatgttaaaaatgttaca 318
Query: 121 gatgtatatatttacctactggtcttattattttaagctttgtgtacttctgattttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatgtatatatttacctactggtcttattattttaagctttgtgtacttctgattttagt 378
Query: 181 tcaaaagttcatgtcatttgtttaaatttcatgtactttgaaaacctcctaattatattt 240
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 379 tcaaaagttcatgccatttgtttaaatttcatgtacattgaaaacctcctaattatattt 438
Query: 241 agaattttggaaaccatcttaaactatttttcacaaactctagaaaaagaaatgtaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agaattttggaaaccatcttaaactatttttcacaaactctagaaaaagaaatgtaaata 498
Query: 301 tgtgtattatattttaaatggaaaattaaattaaaagtactatgaatgcatttattttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgtattatattttaaatggaaaattaaattaaaagtactatgaatgcatttattttaa 558
Query: 361 tctgaaggtaatgagaaaaatagatttaaaaagtgatagaaaaatagattaa-aaatata 419
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 559 tctgaaggtaatgagaaaaatagatttaaaaagtgatagaaaaatagataaataaataga 618
Query: 420 taggcaaaagtgaatgacatttctacaaaatattatattaaagatgatattcttgggaaa 479
||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct: 619 taggcaaaagtgaataacatttctactaaatattatataaaagatgatattcttggggaa 678
Query: 480 cctcttcatatttggcatgaaaggaatcatgggctacacctgctttaagtattggcaacc 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 679 cctcttcatatttggcatgaaaggaatcatgggctacacctgctctaagtattggcagcc 738
Query: 540 tcactgtgtttcttttaa 557
||||||||||||||||||
Sbjct: 739 tcactgtgtttcttttaa 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
