BAC Information

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BAC

Clone NameMSMg01-539F11
Chromosome15 (Build37)
Map Location 81,865,019 - 81,865,569
singlet/doubletsinglet
Overlap geneXrcc6
Upstream geneMkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e
Downstream geneNhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539F11.T7 (MSMg01no539_f11.b1)MSMg01-539F11.TJ (MSMg01no539_f11.g1)
ACCAG605856AG605857
length781758
length of high quality
(start - end)		548 (51 - 598)330 (82 - 411)
definitionCHROMAT_FILE: MSMg01no539_f11.b1 PHD_FILE: MSMg01no539_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:15 2005CHROMAT_FILE: MSMg01no539_f11.g1 PHD_FILE: MSMg01no539_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGGTCATCCGTGGCTACCAATAAGCTTGACGCCAGCTTG
AATGTATGAAACCCTGTCTCCTCCCAACCCCGCCCCCCAAAGGAAAAAGA
AAGGCTTTCCCCTTCAGCTCTAACTTCCTGCTCTACTCCTTCCCCTGAAA
GTATGAGCGCTAAGACTCTACCATGGAGGGCTGGAGATGTACCTTCCTAG
CATGTACAAGCTCTGGGTTTGATCTCAGGTCATGTCTCACAAACATACAC
ACCACCAACAAAAAATATTCCGTGTGTTAGACGCTGTTCCGCATGCAATA
CTGTTGTGGGAAATATTTAAAAATAAACCTGTCTACTCTCCTCTACACAC
AGCCACACCGCAGTCCCGACCTTTCATCCTCCTAAGAAATTGAAAAGGGG
GCTGAGAGGTCTAATAGTTGCACCTATGTCAGGACACCTCTGACCTCTGC
AGGCATGGTGCACACAGACACACTTTAAAAAAAAAAAGAAAGAAAGAAAG
AATCCTGAAAGGTTGATTTTGTGCCCATTTTACAGATCAAACAGGCTTAG
AGGACACAAGGACCCCCTGTCAGTTTCATCCAACTAGGAAAGCAGTAGAG
TGGGACAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGG
CAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGCTCCA
GGACAGCCAGGGCTACACAGAGAAACCCTTN

TTTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCATTATGCTCGGTGG
CAAGGGCCTTACTGACTGAGCCACCTTGCTAGTCCTATCTCTTCTTCTTC
CTTTTTTTTTTGAGACAAGGTCTCATGTAGCCCAGGTTGGCCCAGGACGA
TCCTGCACTCCTGAGCCTTCCTGGTGCTGGGATTGTAGTATGTGTATCCG
GCCATGCTTAAGTGTGGAGAGACAGTACTGTGAATAATGTTCATCTTAGA
AAAGGGGTTTTTGCCGTGCGGTGGTGGCACATTCTTTAATCCCAGTACTT
TGGAAGCAGAGACAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACA
AAGTGAGTTCTAGGACAGCCATGGCTATACTGAGATAACCTGCCTTCTCA
TTTTTTTTATTATCGCTCATTTTTTGGTGTGGGCTTTGTCCTGTCTTTGA
ATTTTTTCTTCCTTATTCTCTTTCTCTGTTCTCTCCTGGCTGTTTTTCTT
CTTTTCTCCTTTCTTACCTTCTTTCCTTTTTTTTTTTTGATTCCCTCTTT
TCCCGCTTTTTTCCTTTTTTTTTTCTTCTACTTCCCCTTTCTTCTTCTCC
CTTCTTCTCCCTTTTTTTATTTCTGTCGTTTTTTCCCTTTTTTTTTTCTC
TTTTCCCTTTTCTTGTTTTCTTTGCCCTTTTTTTTCCCCTTTTTCCTTTC
TTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_f11.b1 MSMg01no539_f11.b1 CHROMAT_FILE:
MSMg01no539_f11.b1 PHD_FILE: MSMg01no539_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:15 2005
         (548 letters)



>mm_chr15_81864819_81865766
          Length = 948

 Score =  957 bits (495), Expect = 0.0
 Identities = 536/551 (97%), Gaps = 6/551 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagggtcatccgtggctac-caataagcttgacgccagcttgaatgtatgaaac 62
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcagggtcatccgtggctacacaataagcttgacgccagcttgaatgtatgaaac 260

                                                                       
Query: 63  cctgtctcctcccaacccc-gccccccaaaggaaaaagaaaggctttccccttcagctct 121
           ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cctgtctcctcccaacccccgccacccaaagaaaaaagaaaggctttccccttcagctct 320

                                                                       
Query: 122 aacttcctgctctactccttcccctgaaagtatgagcgctaagactctaccatggagggc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttcctgctctactccttcccctgaaagtatgagcgctaagactctaccatggagggc 380

                                                                       
Query: 182 tggagatgtaccttcctagcatgtacaagctctgggtttgatctcaggt-catgtctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tggagatgtaccttcctagcatgtacaagctctgggtttgatctcaggtgcatgtctcac 440

                                                                       
Query: 241 aaacatacacaccaccaacaaaaaatattccgtgtgttagacgctgttccgcatgcaata 300
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 441 aaacatacacaccaccaacaaaaaacattccgtgtgttagacactgttccgcatgcaata 500

                                                                       
Query: 301 ctgttgtgggaaatatttaaaaataaacctgtctactctcctctacacacagccacaccg 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ctgttgtgggaaatatttaaaaataaacctgcctactctcctctacacacagccacaccg 560

                                                                       
Query: 361 cagtcccgacctttcatcctcctaagaaattgaaaagggggctgagaggtctaatagttg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtcccgtcctttcatcctcctaagaaattgaaaagggggctgagaggtctaatagttg 620

                                                                       
Query: 421 cacctatgtcaggacacctctgacctctgcaggcatggtgcacacagacacactttaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacctatgtcaggacacctctgacctctgcaggcatggtgcacacagacacactttaaaa 680

                                                                       
Query: 481 aaaaaa---agaaagaaagaaagaatcctgaaaggttgattttgtgcccattttacagat 537
           ||||||   | |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 681 aaaaaagaaaaaaagaaagaaagaaccctgaaaggttggttttgtgcccattttacagat 740

                      
Query: 538 caaacaggctt 548
           |||||||||||
Sbjct: 741 caaacaggctt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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