BAC Information

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BAC

Clone NameMSMg01-539K05
Chromosome15 (Build37)
Map Location 20,777,411 - 20,777,716
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539K05.T7 (MSMg01no539_k05.b1)MSMg01-539K05.TJ (MSMg01no539_k05.g1)
ACCAG606083AG606084
length759774
length of high quality
(start - end)
530 (52 - 581)381 (83 - 463)
definitionCHROMAT_FILE: MSMg01no539_k05.b1 PHD_FILE: MSMg01no539_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:39 2005CHROMAT_FILE: MSMg01no539_k05.g1 PHD_FILE: MSMg01no539_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTTTGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAAGATTCCGTCCAGAGAACTCAGAAAGGTCAACAAGC
TTAAGTGCCCCAGTGAGGATGCCTCAGTCCCACTTGGGAGAGAGAAGAAG
GCAATCACAAGTGGGGAGGGAGGGATGGACCTACGAGGGAAAGTGGGGGA
GAGAGGGGAATCTGATCTGGACTGAAGCCATGAGGGCCAGCAGAAGCATG
GAAACAGGCAACCTTAGGAGATAGGAGGTTTGCAGGACCCTCCAGAATGC
ACCAGAGACCAGGGAGGCGAGACAATCTCAGGACACAAAGCAGGGGACTT
TAGATGAAATGCCCAACAGTAGGGAGAGGGAACTTATAGAGCCCACCTCC
AGCAGTAAGACAGGTCATCAAGTGAGGGATATGGTTGCCATCTCACAGTC
ACAACTCTGACCCATAATTTTTCCTGTCTGAATGGATTACAGGGATGGAA
ATGGAGAGGATTCTGAGGAAAAGAAGGTCCAGCGACAGCCCCAAAGTGGG
ATCCAACTCAAGGGGAGGTCCCAAGACCTGACACTATTACTGAGGCTATG
GAGCGCTCCCAAAAAGGGACCTATCATGACTGCCCTTCCTAAGACTCAGC
AAGGATCTGAAAGAGTCAGATATTTGAACCCTATCTATGGACAGAAGCCG
CTGAGCCCCGTTGTTGTATTAATATATCCGACAACCGCTTAAAAAAGTTG
CTGCCTGGG
GGTGCGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTTTCTCAGAGACAG
GAGTTTTATGAAAAAGGACAAAGCCAAATGGAGGAAACATGTGAATCAAA
CCCACATTACAGGAAAAAAAAAAAAAAGGAGTGTGTGCAAAGGACTAGTC
ATGGGAATGGTTACATGTGGCCTTGACAAGAACAGATGAGATTCCATGTG
TTTAGAATTGGTTTATTTGAATAACTATAATAGGTTCTCTGCCCATAATT
TTCTGATACCATGCCTCTAGATTTAGAATAGATCAACAGCAACTCAGAAT
CTGAGGTCCAGTAAGAAAACTGTTTTTTTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTTATGTATATGAGTATACT
GTATCTGTCTTCAGATACTCCATAAGATTGATATTTATTCTATATGTATG
AGTACCCTGTATCTGTCTTCTGAATCTCCATAAGAGGACATCACATTCCA
TTTACTATTGTCGTTACCCTCCCTGTGGTTGCTGCTAACTGATTATACAC
CCCCCTTCTTTATTTCCTGCCGCTTTTTACTGCTTATTCTTCTTCTTTGC
CTCCTTTTTATAACCGTTTCATGTGCCTTCTCTTGTATCCAAGTTCTTCA
TTTATTTCATTATTTTATTTTCCTTTACTATCCTCTTTTTTCTCTTTCTC
ACTTCCCTTTTTTTTTCTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_k05.g1 MSMg01no539_k05.g1 CHROMAT_FILE:
MSMg01no539_k05.g1 PHD_FILE: MSMg01no539_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:40 2005
         (381 letters)



>mm_chr15_20777211_20777984
          Length = 774

 Score =  547 bits (283), Expect = e-160
 Identities = 302/313 (96%), Gaps = 10/313 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtttctcagagacaggagttttatgaaaaaggacaaagccaaatggaggaaacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtttctcagagacaggagttttatgaaaaaggacaaagccaaatggaggaaacatgt 260

                                                                       
Query: 61  gaatcaaacccacattacaggaaaaaaaaaaaaaaggagtgtgtgcaaaggactagtcat 120
           ||||||||||||||||||||||||||||||       |||||||||||||||||||||||
Sbjct: 261 gaatcaaacccacattacaggaaaaaaaaa-------agtgtgtgcaaaggactagtcat 313

                                                                       
Query: 121 gggaatggttacatgtggccttgacaagaacagatgagattccatgtgtttagaattggt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggaatggttacctgtggccttgacaagaacagatgagattccatgtgtttagaattggt 373

                                                                       
Query: 181 ttatttgaataactataataggttctctgcccataattttctgataccatgcctctagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttatttgaataactataataggttctctgcccataattttctgataccatgcctctagat 433

                                                                       
Query: 241 ttagaatagatcaacagcaactcagaatctgaggtccagtaagaaaactg--tttttttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 434 ttagaatagatcaacagcaactcagaatctgaggtccagtaagaaaactggttttttttt 493

                        
Query: 299 a-tttatttattt 310
           | |||||||||||
Sbjct: 494 aatttatttattt 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 774
Length adjustment: 9
Effective length of query: 372
Effective length of database: 765
Effective search space:   284580
Effective search space used:   284580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)