Query= MSMg01no539_l22.b1 MSMg01no539_l22.b1 CHROMAT_FILE:
MSMg01no539_l22.b1 PHD_FILE: MSMg01no539_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:48 2005
(640 letters)
>mm_chr15_54061812_54062851
Length = 1040
Score = 1116 bits (577), Expect = 0.0
Identities = 624/649 (96%), Gaps = 15/649 (2%)
Strand = Plus / Minus
Query: 5 gaattcctcatctttgtgtcttgtacttgtagaacaacttaatctttatcggacttcctc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcctcatctctgtgtcttgtacttgtagaacaacttaatctttatcggacttcctc 749
Query: 65 tgtttcattctttccaccgacttcagtgtcttgtttctaggaaccttgttttgggcttca 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 748 tgtttcattctttccaccgacttcagtgtcttgtttctaggaacgttgttttgggcttca 689
Query: 125 aatttaagaaaatggttgccctcttccacagatgttccttgt---------------gaa 169
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 688 aatttaagaaaatggttgccctcttccacagatgttccttgtgaaaattctgtttgggaa 629
Query: 170 gacaacttggctagaaaggcattcagcaaacctctgattaaataaggtaacattggtaga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gacaacttggctagaaaggcattcagcaaacctctgattaaataaggtaacattggtaga 569
Query: 230 tacagtagatgtaagtttattgcattgcagacatcactgtctgggctatgaaattcctgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tacagtagatgtaagtttattgcattgcagacatcactgtctgggctatgaaattcctgt 509
Query: 290 tttccctcatttagactttctgagtaagctccatggcatcccgagattatttcctgtacc 349
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 508 ttcccctcatttagactttctgagtaagctccatggcatccagagattatttcctatacc 449
Query: 350 tggaaagtgctttacttcttccttctcttgcgagatacctataaacccttagtgtttcat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tggaaagtgctttacttcttccttctcttgcgagatacctataaacccttagtgtttcat 389
Query: 410 cccaaacacagtggcagataatagtggttctcaactttcctaatgccacaaccctttaat 469
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 388 cccaaacacagtggcagataatagtggttcttgactttcctaatgccacaaccctttaat 329
Query: 470 acagttcctcaagttgtgctgactccccaactataatattattttctttgttacctcata 529
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 328 acagttcctcatgttgtgctgactccgcaactataatattattttctttgttacctcata 269
Query: 530 actgtaactttcctacagctatgaattgtaatgtaaatatctaatatggggtcatgacca 589
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 268 actgtaactttcctacagctatgaattataatgtaaatatctaatatggggtcatgacca 209
Query: 590 acaggttgaagactgctggcttatacaatccttcttacatttctctaag 638
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 acaggttgaagactgctggcttatacaatccttcttacatttctctaag 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_l22.g1 MSMg01no539_l22.g1 CHROMAT_FILE:
MSMg01no539_l22.g1 PHD_FILE: MSMg01no539_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:48 2005
(643 letters)
>mm_chr15_53939770_53940812
Length = 1043
Score = 1220 bits (631), Expect = 0.0
Identities = 640/643 (99%)
Strand = Plus / Plus
Query: 1 tctgtttagatctataacccatttttaattgaattatttaggatgtttcaatgtctagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtttagatctataacccatttttaattgaattatttaggatgtttcaatgtctagtt 260
Query: 61 tcttgagttctttttatattttggatgttagtcctttatcagctacagagttggcaaaaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgagttctttttatattttggatattagtcctttatcagctacagagttggcaaaaa 320
Query: 121 tcttttcctgttccataggctgccactttgtctgattgtgtcttttgccttatagaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttcctgttccataggctgccactttgtctgattgtgtcttttgccttatagaagtt 380
Query: 181 ttttcagtttcatgcattcccatctattaaggtttgatattagtaccggtgctaatggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcagtttcatgcattcccatctattaaggtttgatattagtaccggtgctaatggtg 440
Query: 241 ttctcttggtaaggtcttctatgccaatgagttcaagactattgcctacttcctcttcta 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ttctcttggtaaggtcttctatgccaatgggttcaagactattgcctacttcctcttcta 500
Query: 301 tcagcttcattgtatctggttttaggtcaaagtctttgatccgtttggagttgagcttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagcttcattgtatctggttttaggtcaaagtctttgatccgtttggagttgagcttta 560
Query: 361 tgcgggatggtaagtgtggatctatttgtgtttttctacatgtacaggtctagtttgacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcgggatggtaagtgtggatctatttgtgtttttctacatgtacaggtctagtttgacc 620
Query: 421 agcatgatcagataaactttaatacattgaatcagatttctatctaaaccttcttattca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcatgatcagataaactttaatacattgaatcagatttctatctaaaccttcttattca 680
Query: 481 gagattattgttcaagtgttcaagtacaataataatacagtatgtcaagtgaccacagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagattattgttcaagtgttcaagtacaataataatacagtatgtcaagtgaccacagta 740
Query: 541 tcccaagtacttttatatcacttaaagaaaatgtttgtgtcttatctgctcagcacatgc 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcccaagtacttttatttcacttaaagaaaatgtttgtgtcttatctgctcagcacatgc 800
Query: 601 tgggaatattcatttcattatgaaactttgcaatttggagtgc 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgggaatattcatttcattatgaaactttgcaatttggagtgc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
