BAC Information

Click to search

BAC

Clone NameMSMg01-539M04
Chromosome15 (Build37)
Map Location 99,945,910 - 99,946,282
singlet/doubletsinglet
Overlap genenone
Upstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
Downstream geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539M04.T7 (MSMg01no539_m04.b1)MSMg01-539M04.TJ (MSMg01no539_m04.g1)
ACCAG606175AG606176
length738742
length of high quality
(start - end)
685 (54 - 738)373 (84 - 456)
definitionCHROMAT_FILE: MSMg01no539_m04.b1 PHD_FILE: MSMg01no539_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:50 2005CHROMAT_FILE: MSMg01no539_m04.g1 PHD_FILE: MSMg01no539_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAGTTTTTGGCTTCAAGGTCTTTCTAGGATGTTGGA
ACACTGGCGAAGGCTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTAT
AATAAGATAATACTAAAAGAGAGCATGTGGATCCATACACCAGACTAGTG
CGGGGATAGGGTAAGAATATATGGGTTATGAGAACGCCAAAGTTCCAGGA
GGTGAGTTTCCGTGAAACTCGTTGCCTCGTGAGTGCTCCCAGGCCTCTCT
GCATGCCAAGCAGACTTCACTGGAGTGAGCATAGCATTCTCTCTCTTTCT
TATATTTCTGCCGGATTTCCAGAATGTCCCACCTCGTCATAGCTACAGAT
CTCAGGAGTGCTCTAAAGATGAGTGGAAACACAGCGATTTACTAATAAAA
TAATGCCAATAATAATAGCAAGTAGGAATATATATTGAACCCAATCCAGG
GGATTCAATGCACTTAGGTTATCTTTTACATCTCTGGCTAATTCATCAGT
GTTCCAAGTGTCCAAATGACTATTGCTAATATCTGAAATTTCTGCCTTTC
TAGCCTTAATATATGCTATGTCCTGCCCTATTGTTAAGACTACTACTTCT
AAGACATTAACCTTTGCCTCTAAATCTTTACATGGCTCTGTGGTGTATTA
TTAATAAACCACGGCCTCTTGGCATGTACCTGTCTAGA
CTTCCGATTCTAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGGTTCCCTGCCAA
GTGTTAGCAGAATAGCCTGTAAAATCCTCTTTCAAATATCAGGTGCCTGT
GTGTCATTCCATTTTGGAGTATTTTAAATACCAAGAAAGGGAGGGTGCTG
AGGGATGCCAGGAGTCTCTAGCGAACTGCTGTGCAAGGCTGATGTGGGGA
CAGTCTGCAATTTCCCACAAGTTGCCTCCAAGCCTGCGGGAAGTCACACT
TTACAAAGTCCTGTTGAAGAACCATACTTTTAAAAAATCCACTCTATATG
TGGCACTTCTCTAGCATGCTATAATTAATTCTCTTTTTTCAGTGCTGAAC
CACAGGGTAAGAATAATGAATAACCCATTTCTGTCTCTTGCTGTTTTAGG
GGACATCACACTGAAAGGATATGAAAAGAAAAGGTCCAAACTTCTGTCTT
CTTACAGCCCACAGACTCATGGTTATAGAGGAGAGTCTTCCTAAAGAGAT
ACTGTCTTAATAGATGTCTGTCATCTGTTTGTTCCACCTCACCATCTCAT
ACGGGTAGGATGACTTGTCATAGGCTTGATCAGGGGATGGTTTTCAGTTG
AGCTTCTGCTGAGGCTCTGCCAAGACACCTAATGTCTTCACACCATTTGT
CTATAATCTCCGGCGGTATTGTGCTTAAAAATTGTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_m04.g1 MSMg01no539_m04.g1 CHROMAT_FILE:
MSMg01no539_m04.g1 PHD_FILE: MSMg01no539_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:50 2005
         (373 letters)



>mm_chr15_99945710_99946482
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaggttccctgccaagtgttagcagaatagcctgtaaaatcctctttcaaatatcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaggttccctgccaagtgttagcagaatagcctgtaaaatcctctttcaaatatcagg 260

                                                                       
Query: 61  tgcctgtgtgtcattccattttggagtattttaaataccaagaaagggagggtgctgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctgtgtgtcattccattttggagtattttaaataccaagaaagggagggtgctgagg 320

                                                                       
Query: 121 gatgccaggagtctctagcgaactgctgtgcaaggctgatgtggggacagtctgcaattt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gatgccaggagtctctagcgaactgctgtgcaaggccgatgtggggacagtctgcaattt 380

                                                                       
Query: 181 cccacaagttgcctccaagcctgcgggaagtcacactttacaaagtcctgttgaagaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccacaagttgcctccaagcctgcgggaagtcacactttacaaagtcctgttgaagaacc 440

                                                                       
Query: 241 atacttttaaaaaatccactctatatgtggcacttctctagcatgctataattaattctc 300
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 atacatttaaaaaatccactctatatgtggtacttctctagcatgctataattaattctc 500

                                                                       
Query: 301 ttttttcagtgctgaaccacagggtaagaataatgaataacccatttctgtctcttgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttcagtgctgaaccacagggtaagaataatgaataacccatttctgtctcttgctg 560

                        
Query: 361 ttttaggggacat 373
           |||||||||||||
Sbjct: 561 ttttaggggacat 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)