GGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGCTATTTG
ATTTTCTGGAGTCCACCCTCTTGAGCTCTTTATATATATATATTGGATAT
TAGTCCCCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAGTCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTNTTCTAGAAGAGA
AAAACTGGCTAAAGGCCAAAAAAGGGATGGGGGTTTNCTTTAAGTGGAGA
ACCTGGGAAAAGGGGGAAAAAAAAATTTTNTTTTNNTGGTGGGGGGGGAA
AAAAAAAATTCTCTTTCCCCCGGGGGAGAAAAAAAAAAANAAAATTTTTT
TTTTTNNTTCTCGCCTCCCTNNNNNACACCCCGTTCCGCCGNNTNNNATA
TGTNACTTTTTATCCNCTCCTTTNTTCTCCACCTCTTNNNTTCCTTTTTT
CTTTTTTATACAGAAAAAAAGAAGNGNGAGGGGGCGCGGGGGCCNCCNCC
CCTCCAAGAGCGCGGGGAAAGGAAGGAAAAAAAAAAAAAANNNNCCACNN
NNCACCCCCCCCCCCGGCCAAGAGGAGAGGGAAGTTAGGTTGGGGGGNNC
GTCTCCCTTCTCCTTTCTTTCNCNNNNCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAAAGAGGNNNNNNTGNNNNNAAGGGTGAAGGGGGGACNA
TTA

NNCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGAAATGCTATTTGTGATGAA
CAAACTATGGTAAAAACAATAATATATTATTTGAGATGGAACTATGTGAA
GAAACTTTTGAATCATGATGAGGGTTCTTGAAAAATAATTTGTGTAAACA
CAATCAATCACTCTGATGCTTTCTTGAAGTTCCAACTATTTCAAACTTTT
ATGAAAGAGTTGATATTTGAGAGACTTCTGTTCAGAAAATTTAGGTGTGA
TAATGATAAAGAAGGAATTTCTTTCTGTTTCTGAAACAAAATTAATTTAA
AAATACATGAAAACATTTTGAGAGATCCATAATTCACTTGAAATAATTAA
AAAACCCAATGTATTTTACCACATATTAAATTTTCATGATCCTTTATTAT
GAAAGCTGCATTAGTCTTTGTGTCTGAGCATATATGCATGTACATATGAA
TTTTATTTGCTAGGTTATGAGTTTTTTTAGTTAGAAATCCTTCAGTTTCA
TATAATTAAATTTATATCAATCTATAAAACTCCTATTTTACATGGAATGA
CTTCCCGGATTTTTTTTTTAAAACTTTTCCTTTTTCCTTGGAAGCCAAAG
GGGGCCCCTTTTTTTACGGGGGAAATTTTTTCTCCAGGTCCCTTTTTTTT
GGGGTTA

Query= MSMg01no540_i04.g1 MSMg01no540_i04.g1 CHROMAT_FILE:
MSMg01no540_i04.g1 PHD_FILE: MSMg01no540_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:48 2005
         (468 letters)



>mm_chr15_30050323_30051192
          Length = 870

 Score =  866 bits (448), Expect = 0.0
 Identities = 464/470 (98%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagaaatgctatttgtgatgaacaaactatggtaaaaacaataatatattatttgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 670 ttgagaaatgctatttgtgatgaacaaactatggtaaaaacaataatatattatttgagg 611

                                                                       
Query: 61  tggaactatgtgaagaaacttttgaatcatgatgagggttcttgaaaaataatttgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tggaactatgtgaagaaacttttgaatcatgatgagggttcttgaaaaataatttgtgta 551

                                                                       
Query: 121 aacacaatcaatcactctgatgctttcttgaagttccaactatttcaaacttttatgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aacacaatcaatcactctgatgctttcttgaagttccaactatttcaaacttttatgaaa 491

                                                                       
Query: 181 gagttgatatttgagagacttctgttcagaaaatttaggtgtgataatgataaagaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gagttgatatttgagagacttctgttcagaaaatttaggtgtgataatgataaagaagga 431

                                                                       
Query: 241 atttctttctgtttctgaaacaaaattaatttaaaaatacatgaaaacattttgagagat 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atttgtttctgtttctgaaacaaaattaatttaaaaatacatgaaaacattttgagagat 371

                                                                       
Query: 301 ccataattcacttgaaataatt--aaaaaacccaatgtattttaccacatattaaatttt 358
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccataattcacttgaaataattaaaaaaaacccaatgtattttaccacatattaaatttt 311

                                                                       
Query: 359 catgatcctttattatgaaagctgcattagtctttgtgtctgagcatatatgcatgtaca 418
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 catgatcctttattatgaaagctgcattagtctttgtgtctgagaatatatgcatgtaca 251

                                                             
Query: 419 tatgaattttatttgctaggttatgagtttttttagttagaaatccttca 468
           |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250 tatgaattttatttgcaaggttatgagtttttttagttagaaatccttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 870
Length adjustment: 10
Effective length of query: 458
Effective length of database: 860
Effective search space:   393880
Effective search space used:   393880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)