Query= MSMg01no540_n14.b1 MSMg01no540_n14.b1 CHROMAT_FILE:
MSMg01no540_n14.b1 PHD_FILE: MSMg01no540_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:16 2005
(406 letters)
>mm_chr15_56168868_56169673
Length = 806
Score = 785 bits (406), Expect = 0.0
Identities = 406/406 (100%)
Strand = Plus / Plus
Query: 1 tgaaaaataatatgatcaaacatttgaaaatattttaatagaagataaatattaaatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaaaataatatgatcaaacatttgaaaatattttaatagaagataaatattaaatggt 260
Query: 61 atgggtacataattgtcacctctacctctatttttataaatacccgttctgtggatgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggtacataattgtcacctctacctctatttttataaatacccgttctgtggatgatt 320
Query: 121 atgcaaaaggcttaagttttccacaacgaattgcaaaatcagacttctcctccaccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcaaaaggcttaagttttccacaacgaattgcaaaatcagacttctcctccaccaaga 380
Query: 181 ttcatgaagaaataatgaagagaagataactaaaaccaagtgaaataaattcaaaggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgaagaaataatgaagagaagataactaaaaccaagtgaaataaattcaaaggaca 440
Query: 241 ggtgtaaggttatttcattcctcaagctatgtaccatggattctttgatattttgctcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgtaaggttatttcattcctcaagctatgtaccatggattctttgatattttgctcaa 500
Query: 301 ggtgggttgtaagttttgttctggttttcccaacagcagagcataatgagtaaaatatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgggttgtaagttttgttctggttttcccaacagcagagcataatgagtaaaatatga 560
Query: 361 tttagtgtgtgatttataggcaggcctagccacataattttctggc 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagtgtgtgatttataggcaggcctagccacataattttctggc 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_n14.g1 MSMg01no540_n14.g1 CHROMAT_FILE:
MSMg01no540_n14.g1 PHD_FILE: MSMg01no540_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:16 2005
(553 letters)
>mm_chr15_56200791_56201743
Length = 953
Score = 944 bits (488), Expect = 0.0
Identities = 506/520 (97%), Gaps = 14/520 (2%)
Strand = Plus / Minus
Query: 1 caatgaacatattgaatacagaacatcctccccccttgctgtcaatcaatcagtgtcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caatgaacatattgaatacagaacatcctccccccttgctgtcaatcaatcagtgtcact 460
Query: 61 tcataattttcattctgcggttattcttttgaccatgctttactcagtattcttggttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcataattttcattctgcggttattcttttgaccatgctttactcagtattcttggttag 400
Query: 121 tgacttatttcttcttcctgctagtactgtgcttggcaaactcctcttttatattatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgacttatttcttcttcctgctagtactgtgcttggcaaactcctcttttatattatcat 340
Query: 181 ctccatcagaccatgctcatgttagcctattaactctccaattccatttcttcctggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctccatcagaccatgctcatgttagcctattaactctccaattccatttcttcctggttg 280
Query: 241 agaaatcttcaaagactgaaaatgatttaaaatactaaatccttaatgtgacatttagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agaaatcttcaaagactgaaaatgatttaaaatactaaatccttaatgtgacatttagca 220
Query: 301 tgttcaactctcaagttggtttgtttttggttttggttttggttttttttttgtgagaat 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 219 tgttcaactctcaagttggtttgtttttggttttggttttgg-tttttttttgtgagaat 161
Query: 361 aagaagtgtggtggtaaatctaattaagaaaggggg-------------gagagagagag 407
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 aagaagtgtggtggtaaatctaattaagaaagggggagagggagagagagagagagagag 101
Query: 408 agagagagagagagagagagagagagagagagagagatacagaaacacagagacagagat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agagagagagagagagagagagagagagagagagagatacagaaacacagagacagagat 41
Query: 468 tcaactgattttcctgaagtgatgtcaagtttggtggttt 507
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tcaactgattttcctgaagtgatgtcaagtttggtggttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
