Query= MSMg01no540_n22.b1 MSMg01no540_n22.b1 CHROMAT_FILE:
MSMg01no540_n22.b1 PHD_FILE: MSMg01no540_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:18 2005
(613 letters)
>mm_chr15_52174201_52175213
Length = 1013
Score = 1147 bits (593), Expect = 0.0
Identities = 609/619 (98%), Gaps = 9/619 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgaaggac-tgaccgagagagtgctgctgcatggagcattgatttggaagtta 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattctgaaggacatgaccgagagagtgctgctgcatggagcattgatttggaagtta 254
Query: 63 gattacctaagttgggatctcagctcttcatcttattggctctgtaacctctcacgctgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gattacctaagttgggatctcagctcttcatcttattggctctgtaacctctcacgctgg 314
Query: 123 ttacttaagtactctgacccttcatttcctgagtggcaaaacgttcctatttagttgcct 182
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Sbjct: 315 ttacttaagtactctgacccttcatttcctgagtggcaaaacgttcctatttagttgcct 374
Query: 183 gagtattaaaaaaaaattggaacagttagaagagttcaaactgtgcaaagtgttcggtca 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 375 gagtattaaaaaaaaattggaacagttagaagagttcaaactgtgcaaagtgtttggtca 434
Query: 243 tcattcaggatatattagcgatcatttatgaaagtgagaatatatatatatatatatata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcattcaggatatattagcgatcatttatgaaagtgagaatatatatatatatatatata 494
Query: 303 tatatatatatatat--------cacagatttaaatcatccaactctttagaaactccta 354
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatatatatatatatatatatctcacagatttaaatcatccaactctttagaaactccta 554
Query: 355 tgtcatcagcacaaataccactacagacaagcaaaatggctggtgaaaattaaacagtct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtcatcagcacaaataccactacagacaagcaaaatggctggtgaaaattaaacagtct 614
Query: 415 ttttataagaaagaataattgagccttgctgagataaaggcgttaactgagagaacactt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttataagaaagaataattgagccttgctgagataaaggcgttaactgagagaacactt 674
Query: 475 cccaccgaggaagtcatgaactaattaaatcagtccaatctcttcctgtcagtctctgaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cccaccgaggaagtcatgaactaattaaatcagtccaatctcttcctgtcagtctctgaa 734
Query: 535 aatgtctactctcatctttgaagcagaggctgattaatcactccaagtgtgtttattagc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatgtctactctcatctttgaagcagaggctgattaatcactccaagtgtgtttattagc 794
Query: 595 aaaaaagtgtaactggcca 613
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Sbjct: 795 aaaaaagtgtaactggcca 813
Score = 72.3 bits (37), Expect = 1e-16
Identities = 42/45 (93%), Gaps = 3/45 (6%)
Strand = Plus / Minus
Query: 276 gtgaga---atatatatatatatatatatatatatatatatatat 317
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtgagatatatatatatatatatatatatatatatatatatatat 476
Score = 70.3 bits (36), Expect = 4e-16
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 282 atatatatatatatatatatatatatatatatatat 317
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Sbjct: 509 atatatatatatatatatatatatatatatatatat 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 5
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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