Query= MSMg01no540_p23.b1 MSMg01no540_p23.b1 CHROMAT_FILE:
MSMg01no540_p23.b1 PHD_FILE: MSMg01no540_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:28 2005
(616 letters)
>mm_chr15_80679074_80680089
Length = 1016
Score = 1176 bits (608), Expect = 0.0
Identities = 611/612 (99%)
Strand = Plus / Plus
Query: 5 gaattccatatgctctgtagcccagtttcaaccagtggtaactgagtgtaaaactatagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatgctctgtagcccagtttcaaccagtggtaactgagtgtaaaactatagt 264
Query: 65 acaatatcacagccaagattatgacactgatacaacccaagaatcttatcaaggttctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatatcacagccaagattatgacactgatacaacccaagaatcttatcaaggttctca 324
Query: 125 ttttatttgtatttgtgtacatgtgcacatatgtagttctacacagttctgtcacatctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttatttgtatttgtgtacatgtgcacatatgtagttctacacagttctgtcacatctc 384
Query: 185 catcattattgagacagagcatctctttaatgtcatctgcctcaccctcacctgcagcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catcattattgagacagagcatctctttaatgtcatctgcctcaccctcacctgcagcct 444
Query: 245 atggctgccaaccacttggtctttcagagatgttacatagaagccatgagataatacttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggctgccaaccacttggtctttcagagatgttacatagaagccatgagataatacttg 504
Query: 305 agactgtatctgttcagatctgtccactagtctatggagttgtttgcaaactctgtgact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agactgtatctgttcagatctgtccactagtctatggagttgtttgcaaactctgtgact 564
Query: 365 agaagagctgccacttagctcaggtgtctgagttgtcttggaggctactgatggccagtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaagagctgccacttagctcaggtgtctgagttgtcttggaggctactgatggccagtt 624
Query: 425 acccagacctttaagaagatgattctcccgaatatatgcagcaatttcctgtctaatcga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acccagacctttaagaagatgattctcccgaatatatgcagcaatttcctgtctaatcga 684
Query: 485 accttgctcatcagtctaagctgagctgttcatcattttactctagttaccacagccaag 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accttgctcattagtctaagctgagctgttcatcattttactctagttaccacagccaag 744
Query: 545 atactgatagtccttccttttctctccttcatgggtgatctcttaactggattaacacag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atactgatagtccttccttttctctccttcatgggtgatctcttaactggattaacacag 804
Query: 605 tatggctgcaca 616
||||||||||||
Sbjct: 805 tatggctgcaca 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p23.g1 MSMg01no540_p23.g1 CHROMAT_FILE:
MSMg01no540_p23.g1 PHD_FILE: MSMg01no540_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:28 2005
(620 letters)
>mm_chr15_80784810_80785827
Length = 1018
Score = 1052 bits (544), Expect = 0.0
Identities = 591/620 (95%), Gaps = 22/620 (3%)
Strand = Plus / Minus
Query: 1 cacccccagtgccacattaacttggaatggtagctaacacctccaacaccagcactttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cacccccagtgccacattaacttggaatggtagctaacacctccaacaccagcactttag 630
Query: 61 aagcagaggcaggaggatcaagaattcaaggtcattcttgcccacagagcaagctcaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 629 aagcagaggcaggaggatcaagaattcaaggtcattcttgcccacagagcatgctcaagc 570
Query: 121 taaggactagaatcagctacaggagaggctgttagggagcggggacaacttacagagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 taaggactagaatcagctacaggagaggctgttagggagcggggacaacttacagagcag 510
Query: 181 gaggacaggacactggattactgggatccataaggaacaatacctttattgttcacagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaggacaggacactggattactgggatccataaggaacaatacctttattgttcacagtg 450
Query: 241 tggtggctacactgactgagaacttatgtaagtccatgggcttttacatttcttacatgg 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 449 tggtggctacactgactgagaacttgtgtaagtccatgggcttttacatttcttacatgg 390
Query: 301 cacattccatcagtagtctctctacttttcctcatccaacatccatccatccatccatcc 360
|||||||||||||||| ||||||||||||||||||||| |
Sbjct: 389 cacattccatcagtag--tctctacttttcctcatccaa--------------------c 352
Query: 361 atccatccatccatccatccatccatccatccatccattgtattttttccctgaacattt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 351 atccatccatccatccatccatccatccatccatccattgtattttctccctgaacattt 292
Query: 421 atataggcaaggtatctctggctgttacggaacttagtatgtagaccaggctggctttgt 480
||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 291 atataagcaatttatctctggctgttatggaacttagtatgtagaccaggctggctttgt 232
Query: 481 cctcacagagatctgagcccctgcctcccaacttccaggacccttgccccatcatctatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cctcacagagatctgagcccctgcctcccaacttccaggacccttgccccatcatctatc 172
Query: 541 cttgatagcacaggaaggcatgatctagaacatcagagtttaagaaacgtaaaacttcga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cttgatagcacaggaaggcatgatctagaacatcagagtttaagaaacgtaaaacttcga 112
Query: 601 tttcttttacccccagtcct 620
||||||||||||||||||||
Sbjct: 111 tttcttttacccccagtcct 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1018
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1008
Effective search space: 614880
Effective search space used: 614880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
