NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAAGGAGCTATCTAGCAAGACTTGTTCTTACACTTGATA
AATGTTCCTTCAGGAAAATTAATAACTGCCAGATTTTATAATAAACCTTT
ACTGTTGAGTTGGAGGTATTTTAAAATAAATTGATATATTAAAGAAAAAT
AATTTGTCATAATCACACAAAAATCAAGATACATATATTGTTATGAAAAT
TAGTATAATATATACTGATTTTTATTACATTCAGTTAAGTCTCGCTAAAA
CCTTTAGCCCAATATCCTTCAATTTGCATAAATATGTAAGTATATAATTT
CATGTGATACACAATAATTCATCCAGTAATCTCTCTATCATATTATTTTG
CAGGAATAGTCAATATAAAACTAAATATATAGATATCATCCAAATAATAT
CTCATTAAAAATTAGTTTATTCCTCAGTGAAGCAATACTAAAAAGTTTTC
AATGATTACTAAACATTTTCAATTAAATATATTAAATAATATATATTAAA
CATGAAACTATATTAATCAATATTTAATTGTTCTAGATTTAAGCTATCTA
ATCTCTATATCCCCAAATAGCACAAATACAATTTTCTAATTACTTTAAAA
TAAGATAAAATGTAAGAAATATTCAAATGGACAAAACCAAACAGTTTATT
AATTTAATGAGCCTTTCTGCTCATTGTATGTCTTAGAGAGACCATTGACT
CAAGAATCAGACTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCC
GTAAAACAGACTGTTGAGAAGGATTCAACTGTGTGAATTCAGAACTCTTC
AGCTGGGGAACGGTGGTAATAAAGTGTTCCCACAACACAGACTGTTGAGA
AGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACC
CGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAATGAAA
TTCAAGACAGTCTATCAGAAGTAAAGTGGAAAAACGACACGGGAGCAGGT
CAGGGTTGCTCTGGGTAAAAGCCTGTGAGCCTAAGAGCTAATCCTGTACA
TAGCTCCTTTACCTGCACACTGGGGATTTGACCTCTATCTCCACTCTCAT
TAATATGGGTGGCCTATTGCTCTTATTAAAAGAAAAGGGAGAGAGAGTAG
GAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCACG
GGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGA
GATTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATCAGCGG
AGGTCTCTAGGAGAAGGAGCCTATACTCATCACTAGGTGAGCTCAAGAAG
CCAGTTCTTAATAGTTCTGAATCAGATGAAAAGGCTATTA

Query= MSMg01no541_b10.b1 MSMg01no541_b10.b1 CHROMAT_FILE:
MSMg01no541_b10.b1 PHD_FILE: MSMg01no541_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:36 2005
         (613 letters)



>mm_chr15_17203772_17204784
          Length = 1013

 Score = 1131 bits (585), Expect = 0.0
 Identities = 603/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggagctatctagcaagacttgttcttacacttgataaatgttccttcagga 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggagctatctagcaagacttgttctttcacttgataaatgttccttcagga 264

                                                                       
Query: 65  aaattaataactgccagattttataataaacctttactgttgagttggaggtattttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattaataactgccagattttataataaacctttactgttgagttggaggtattttaaa 324

                                                                       
Query: 125 ataaattgatatattaaagaaaaataatttgtcataatcacacaaaaatcaagatacata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaattgatatattaaagaaaaataatttgtcataatcacacaaaaatcaagatacata 384

                                                                       
Query: 185 tattgttatgaaaattagtataatatatactgatttttattacattcagttaagtctcgc 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tattgttatgaaaattagtataatatatactggtttttattacattcagttaagtctcgc 444

                                                                       
Query: 245 taaaacctttagcccaatatccttcaatttgcataaatatgtaagtatataatttcatgt 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaaactttagcccaatatccttcaatttgcataaatatgtaagtatataatttcatgt 504

                                                                       
Query: 305 gatacacaataattcatccagtaatctctctatcatattattttgcaggaatagtcaata 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatacacaataattcatgcagtaatctctctatcatattattttgcaggaatagtcaata 564

                                                                       
Query: 365 taaaactaaatatatagatatcatccaaataatatctcattaaaaattagtttattcctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaactaaatatatagatatcatccaaataatatctcattaaaaattagtttattcctc 624

                                                                       
Query: 425 agtgaagcaatactaaaaagttttcaatgattactaaacattttcaattaaatatattaa 484
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 agtgaagcaatactaaaaagttttcaatgattactaaacatttttaattaaatatattaa 684

                                                                       
Query: 485 ataatatatattaaacatgaaactatattaatcaatatttaattgttctagatttaagct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataatatatattaaacatgaaactatattaatcaatatttaattgttctagatttaagct 744

                                                                       
Query: 545 atctaatctctatatccccaaatagcacaaatacaattttctaattactttaaaataaga 604
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atctaatctctatatcaccaaatagcacaaatacaattttctaattactttaaaataaga 804

                    
Query: 605 taaaatgta 613
           |||||||||
Sbjct: 805 taaaatgta 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)