BAC Information

Click to search

BAC

Clone NameMSMg01-541H19
Chromosome15 (Build37)
Map Location 5,894,754 - 5,895,081
singlet/doubletsinglet
Overlap geneLOC100039358
Upstream gene4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541H19.T7 (MSMg01no541_h19.b1)MSMg01-541H19.TJ (MSMg01no541_h19.g1)
ACCAG607490AG607491
length772780
length of high quality
(start - end)		621 (46 - 666)328 (76 - 403)
definitionCHROMAT_FILE: MSMg01no541_h19.b1 PHD_FILE: MSMg01no541_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:09 2005CHROMAT_FILE: MSMg01no541_h19.g1 PHD_FILE: MSMg01no541_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAAGCAATAGAGGAATGCAAGTATTATATCTCATAATGCTTTC
TTTTACTGATTTCAGCAGAAAATAGCTCATTAAATGACTGAAGCTGTTTT
CATTGCTCTTTGTTATGCCGCTGAACTTGGTGGTAGATTCTACTTCTGAA
CATACCACATACATGAGTTATAGGACATCGAGAAATCAAGCTGGTGTCAA
CTTGGAAATACCATCTTTAATGGATGGCTTTCATAATGCTGGAAGCGAAT
GGTAGTTGTGGGGAGAAGCATAATCAATGTACTTAACAAACTGAATTCTG
TGAACAACAGTAAGAACTTTCCTGACAATGTGTGCTTACTGGGGCAATAG
TATCATGAATGTTATGGTAGTAAATCACCTTCTTATTGGATTTTAGCATT
GTTCTACAGGATGAGCCTCAGGTCTTTACTGTTAACTGGGCTGACAACCT
GTGATTTGTTTGGCTCTAGGTTAGAATCTAATGTTATTATTCTTCTAAAC
AGGTACACCATTAAACTACCTTCTATGTTCTTATGCTTACACTAATAGAT
TAATTAAAATTTCAACCCTTATCAGAAAAAAGTTTTACTTTTTGGTTTTT
TTTGGGGGGGTGTTTTGGTTTTTGTNTTGTTTTTAAGTACACAATGATGC
ATACAGAGACCATAACTGGTCAGTGAGTAGAGTGCCACATACTAAGGAGT
GTTCAGCTCTAAATGTAATATC

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTTCTTCAGCCTTCAGGCTGGAA
AAAATAACTTGTTGTGTAAGCTTTGGCTTTCTTGTCTGCACAGAGAACAA
AAAGTTAGCCAGGGCCCAGGGAATTCTTAAGAAGACACTAAATGTAAACT
TATCAGTGTGACTCTTTGTGCCTCAGAACACTTGGGTGAGTTGTTGAAAT
GTATTACTATCCAATGAGTGAATTATGGCTTTAGACAGGTGAACTTGGAT
TACCTAGACTCACTGGGACCTATTGCTTTTCATGTGTTAAAGACTATAGA
AAGACGGAGAAGATAGAACAAAGAACATTAGTAGCACCTTGGGACAATAA
GAGAAGAAAATGTATGAATAGTATCTGGGCAAAACTCCAGCCATGAATAT
GTATTTTTGCTTCACCTAGAAGCATAACTATTCATTANNGTAAGAAAATA
NCTTGACATTACTTTAACTATATAGNTTTTTATTTCCAGGATTNGAAGAA
AGAAGGAAAACCCTCCTCCCCTAATTTACTGCAATGGAAGAATTTAAAAC
CTCCCTTTTTGCCCTTGTTTAAGCCGAAAAAAATTTTGGACTTTCCAAAC
CTTTGAAAAGGGGTAAGGGGTTTTGCCCCCCCCCCATTTTTATAGGGGAT
CTTCCGGGGGGCCCTTTTGTGGAAAAAAAATATTTTTAAAAAATATAATC
TTTTTTTGGGGGCGCCCCGGGGAAAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_h19.g1 MSMg01no541_h19.g1 CHROMAT_FILE:
MSMg01no541_h19.g1 PHD_FILE: MSMg01no541_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:10 2005
         (328 letters)



>mm_chr15_5894554_5895281
          Length = 728

 Score =  572 bits (296), Expect = e-168
 Identities = 320/328 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttcttcagccttcaggctggaaaaaataacttgttgtgtaagctttggctttcttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttcttcagccttcaggctggaaaaaataacttgttgtgtaagctttggctttcttgt 260

                                                                       
Query: 61  ctgcacagagaacaaaaagttagccagggcccagggaattcttaagaagacactaaatgt 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 261 ctgtacagagaacaaaaagttagccagggcccagggaattcttaagaagacagtgaatgt 320

                                                                       
Query: 121 aaacttatcagtgtgactctttgtgcctcagaacacttgggtgagttgttgaaatgtatt 180
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 321 aaacttatcagtgtgactctttgtgcctcagaacacgtgggttagttgttgaaatgtatt 380

                                                                       
Query: 181 actatccaatgagtgaattatggctttagacaggtgaacttggattacctagactcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actatccaatgagtgaattatggctttagacaggtgaacttggattacctagactcactg 440

                                                                       
Query: 241 ggacctattgcttttcatgtgttaaagactatagaaagacggagaagatagaacaaagaa 300
           |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct: 441 ggacctattgcttttcatgtgttaaagactatagaaaggcagagaagatagaaaaaagaa 500

                                       
Query: 301 cattagtagcaccttgggacaataagag 328
           ||||||||||||||||||||||||||||
Sbjct: 501 cattagtagcaccttgggacaataagag 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |