Query= MSMg01no542_k19.b1 MSMg01no542_k19.b1 CHROMAT_FILE:
MSMg01no542_k19.b1 PHD_FILE: MSMg01no542_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:47 2005
(586 letters)
>mm_chr15_76508049_76509033
Length = 985
Score = 1081 bits (559), Expect = 0.0
Identities = 576/585 (98%), Gaps = 7/585 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagtgatgtctctagaactacttatcctcctacttcagatccagagtcctggga 63
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgatgtc-ctagaactacttattctcctacttcagatccagagtcctggga 262
Query: 64 ttgctactgaagataccagtcccatactggtcagcggccatactgggaaggggactgtct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgctactgaagataccagtcccatactggtcagcggccatactgggaaggggactgtct 322
Query: 124 aggagggtcagtcatcttaaatctctttgttctccttcccaatgtagccatattgaatac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggagggtcagtcatcttaaatctctttgttctccttcccaatgtagccatattgaatac 382
Query: 184 atcatttttttgctttttac------tttttttttttttggtttctctgtgtagccctgg 237
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 383 atcatttttttgctttttactttttttttttttttttttggtttctctgtgtagccctgg 442
Query: 238 ctgtcctggatctcactctgtagaccaggatggccttgaactcagaaatccgcctgcctc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtcctggatctcactctgtagaccaggatggccttgaactcagaaatccgcctgcctc 502
Query: 298 tgcctcccaagtgctgtcattaaaggcctgcgccaccaccgcccagctgctttttactct 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 tgcctcccaagtgctgtcattaaaggcctgcgccaccaccacccagctgctttttactct 562
Query: 358 taatttggctcttttagttgctttattgagtgcagagtgcaggcaagatggcttagaaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taatttggctcttttagttgctttattgagtgcagagtgcaggcaagatggcttagaaga 622
Query: 418 tgaaggtgcttgctgcccagcctgatgacctgagtggtatctctgagacctatgtaagct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgaaggtgcttgctgcccagcctgatgacctgagtggtatctctgagacctatgtaagct 682
Query: 478 atactcttacttccatgtgtgcctattatatagcgctggctggcccagacctcactatgg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atactcttacttccatgtgtgcctattatatagcgctggctggcccagacctcactatgg 742
Query: 538 ctgtgtagactagccttgccttgagctcacagagatccacctgcc 582
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgtgtagactagccttgccttgagctcacagagatccacctgcc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k19.g1 MSMg01no542_k19.g1 CHROMAT_FILE:
MSMg01no542_k19.g1 PHD_FILE: MSMg01no542_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:47 2005
(671 letters)
>mm_chr15_76651923_76652993
Length = 1071
Score = 969 bits (501), Expect = 0.0
Identities = 510/513 (99%)
Strand = Plus / Minus
Query: 158 tcttcttcctcctcttcctccccccttccacctccaccccttcttccttttcctcttcct 217
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 tcttcctcctcctcttcctccccccttccacctccaccccttcttccttttcctcttcct 1012
Query: 218 cttcttttctttaagccaggattatgttaggcagtcctggctggcctagaatatactatg 277
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 1011 cttcttttctttaagccaggattatgttaggcagtcctggctagcctagaatatactacg 952
Query: 278 tagataaggctgacctcattgagatccacctgcctctgcctcccaagtgctgggatcaaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 tagataaggctgacctcattgagatccacctgcctctgcctcccaagtgctgggatcaaa 892
Query: 338 gggaggtgccaccatgcccagaattgggacatttcttaatcctccccacttgacaattta 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gggaggtgccaccatgcccagaattgggacatttcttaatcctccccacttgacaattta 832
Query: 398 agcatcagaactcctctcaacaaaggccattcgaccataaggtaaggtgttgaatgttcc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 agcatcagaactcctctcaacaaaggccattcgaccataaggtaaggtgttgaatgttcc 772
Query: 458 ccagaggtaaagacaaaggtgataatggacgaaggcactgtattcaacaagtaacctaaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ccagaggtaaagacaaaggtgataatggacgaaggcactgtattcaacaagtaacctaaa 712
Query: 518 caggaatgtgtctgtgcataattgtgaacaagggaagaccaaaacacggtgatactgagg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 caggaatgtgtctgtgcataattgtgaacaagggaagaccaaaacacggtgatactgagg 652
Query: 578 tgctaggcttgtttttccaggacacagtcaccaaagaaataagagtatggtagggtgcat 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgctaggcttgtttttccaggacacagtcaccaaagaaataagagtatggtagggtgcat 592
Query: 638 aggataggaagtaatggagggattttgttttta 670
|||||||||||||||||||||||||||||||||
Sbjct: 591 aggataggaagtaatggagggattttgttttta 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
