BAC Information

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BAC

Clone NameMSMg01-542L02
Chromosome15 (Build37)
Map Location 102,230,941 - 102,231,556
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Downstream geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542L02.T7 (MSMg01no542_l02.b1)MSMg01-542L02.TJ (MSMg01no542_l02.g1)
ACCAG608406AG608407
length769782
length of high quality
(start - end)		616 (44 - 659)430 (76 - 505)
definitionCHROMAT_FILE: MSMg01no542_l02.b1 PHD_FILE: MSMg01no542_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:49 2005CHROMAT_FILE: MSMg01no542_l02.g1 PHD_FILE: MSMg01no542_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAACCCAGCCTGGTCTAAATGCAAGTCCCAGGCCACCTAAATCCGCA
CAATGAAATAAAAACAAACTCCACACAATTTTAAGTTTGTTTTTTTTTTT
CTCTCTGTAGCTGAACTGTGGTATAACCACAAATACATATTGCCTCTTCT
GAGAAGAGCCTGTAATAAGACTGTCCTAATATAAACCCCACAGATGGTCT
CTGAGGCAATAGGGGATGGGTACATGGGACCCTGTCTCAAAAAACAAACA
AAAGGCAGGAGGTGGTTGTGTTGGCAGGCATTGCAGTCTGCAATTGAAAG
GTTGTAGCTGCTGAGGAGAGAATGTCGATTGCTGGCACGGGCTACGTAAA
GAGACCTTGTCTCTAAAAACAAATAGGAAGGCTTGAGGTACAGTCCAGAA
GACAAGTTATGTTAATTCCTAGTCCATCCGCATTTGGGGGTGGGGAACGA
AACAAGGGTTGCAAGGAACAGGTCTTGACTGTCCTAGAGCTAGTTTTGTA
GACCTCACCGACCTTGAACTCACAGAGATCTTACCTCTACCTAGCTGGGG
TTAAAACCGTTTCACGACACGGGTTACTAGCTGCATTTTGTTTGTTTTGT
TTTGTTTTGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTTGCTGTCCTGG
AACTCACTCTGTAGACCAGAATGGTCTAGAACCAAGAGATCCACTTGCCT
CTGCCTCCCAAGTGCTGGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGGGCTACAGAGCAA
GACTCTTTTTTTTTTGAGACAGGGTTTCTGTATAGCCCTGGCTGTCCTGG
AACTCACTCTGTAGACCAGGCCTCAAACTCAGAAACCCACCTGCCTCTGT
CTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCCCGGCCAGAGC
AAGACTCTTATCTCTAAAAACAAACAACAAAATTAAATTTAAAGGTTGGG
CGGAAAAAAAAAAAAGAAAGAAAGAAAAAAAAAGCTGGGTGGCATACATA
CATGCAGCTCTAAATGGAGTCAAGGATTCTCAAAAAAGAAAAAGAAAAAG
AAAAGAACGGGGCTGGAGAGCTGGCTCAGAGTTAAGAGCACTAACTGCTA
ATTCTGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA
CCATCCGTAATGAGATGTGACGCCCTCTTCTAGAGTTTCTGAAGACAGCC
ACNGTGTACTTACATATAATAAATAAATAAATTCTTTTAAAAGAAAAAGA
CCACGTGAAATTTAAAAGGGAATATGGGTAGGTAACATTTGTTGAACTGT
AATAGGTCAAGAATAGGGGAGTTTAAATTTTGATCTCAAACACCCTTATT
ATTATTACCTTCTGAAAGGTTAAATATTTTAAAAATTTAAAATTATTTTT
TATGGGATAAAGAATGGTTTTACCCTGCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_l02.b1 MSMg01no542_l02.b1 CHROMAT_FILE:
MSMg01no542_l02.b1 PHD_FILE: MSMg01no542_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:49 2005
         (616 letters)



>mm_chr15_102230878_102231894
          Length = 1017

 Score = 1077 bits (557), Expect = 0.0
 Identities = 601/617 (97%), Gaps = 6/617 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaacccagcctggtctaaatgcaagtcccaggccacctaaatccgcacaatgaa 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 gaattcaaacccagcctggtctaaaagcaagtcccaggccacctaaatccgcacaatgaa 620

                                                                       
Query: 65  ataaaaacaaactccacacaattttaagtttgttt-ttttttttctctctgtagctgaac 123
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 619 ataaaaacaaactccacacaattttaagtttgtttgttttttttttctctgtagctgaac 560

                                                                       
Query: 124 tgtggtataaccacaaatacatattgcctcttctgagaagagcctgtaataagactgtcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtggtataaccacaaatacatattgcctcttctgagaagagcctgtaataagactgtcc 500

                                                                       
Query: 184 taatataaaccccacagatggtctctgaggcaataggggatgggtacatgggaccctgtc 243
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 499 taatataaaccccacagatggtctctgaagcaataggggatgggtacatggaaccctgtc 440

                                                                       
Query: 244 tcaaaaaacaaacaaaaggcaggaggtggttgtgttggcaggcattgcagtctgcaattg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaaaaaacaaacaaaaggcaggaggtggttgtgttggcaggcattgcagtctgcaattg 380

                                                                       
Query: 304 aaaggttgtagctgctgaggagagaatgtcgattgctggcacgggctacgtaaagagacc 363
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 379 aaaggttgtagctgctgaggagagaatgtccattgctggcacgggctacataaagagacc 320

                                                                       
Query: 364 ttgtctctaaaaacaaataggaaggcttgaggtacagtccagaagacaagttatgttaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 ttgtctctaaaaacaaataggaaggcttgaggtacagtccagaagacaagttacgttaat 260

                                                                       
Query: 424 tcctagtccatccgcatttgggggtggggaacgaaacaagggttgcaaggaacaggtctt 483
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcctagtccatccgcacttgggggtggggaacgaaacaagggttgcaaggaacaggtctt 200

                                                                       
Query: 484 gactgtcctagagctagttttgtagacctcaccgaccttgaac-tcacagagatcttacc 542
           ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 199 gactgtcctagagctagttttgtagacctcaccgaccttgaacat-acggagatcttacc 141

                                                                       
Query: 543 tctacctagctggggttaaaaccgtttcacgacacgggttactagctgcattttgtttgt 602
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 140 tctacctagctggggttaaaaccgtttcacgacaccggttactagctgcattttgtttgt 81

                            
Query: 603 tt---tgttttgttttg 616
           ||   ||||||||||||
Sbjct: 80  ttgtttgttttgttttg 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space:   610242
Effective search space used:   610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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