BAC Information

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BAC

Clone NameMSMg01-542P11
Chromosome15 (Build37)
Map Location 12,410,748 - 12,580,889
singlet/doubletdoublet
Overlap genePdzd2, LOC100040109
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542P11.T7 (MSMg01no542_p11.b1)MSMg01-542P11.TJ (MSMg01no542_p11.g1)
ACCAG608614AG608615
length756746
length of high quality
(start - end)
646 (49 - 694)670 (77 - 746)
definitionCHROMAT_FILE: MSMg01no542_p11.b1 PHD_FILE: MSMg01no542_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:10 2005CHROMAT_FILE: MSMg01no542_p11.g1 PHD_FILE: MSMg01no542_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,410,748 - 12,411,391)(12,580,237 - 12,580,889)
sequence
NNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTATATTTTATGTATATTTTCTCTTTGTGCCTTCTTCCCCT
AAACCCGTGCAGCTCGGAGGAGACGTGTAGTGGCTGCCTGGCACTGAGAC
TAATCACCATGGACTACCCGAGTATCTCTTCCTGGCCGTGCAGAACCATT
TCCTGGGAGGATGAATAAAGCTTTATTTTAGGGGGAATCTGCTTGTTGAA
CATCTGCAGCAGATTTTCACAGATATTAAAAGCTGTCTGGTTTCAAATCA
GACTTGGAACAAACAGTCCAAACCTCTGTCATTCGAAAAGGCTAGATCTT
GAAGCTTTTTGCCACCCAGGACAACAAAAGAGGGGGGAAGGAAGGCAGCC
ACTGCCTTCTGGATACAGAACAACATCCTGGGACTTGCATATACTTGCTC
ACCTGCAGCATCTGCTCTAGAGCGCAGTGGAAAAGTGACTGCAAAATGAG
CAGAGTGTGAAATGATTCATCAACCGCTGACAGAATCACCCTAGTCAGGA
AATGAGAAATCCCGATTCCTCCTCCCTGCCCCCAGTAGGCTGTTAGTCCT
ACGAAAGTGTTGCTTCTGCATATAGAGGGTCCATATAAGGCAGTGGCTCT
CAACCTTCCTAATGCTGGGTCCCTTTAATACATTTCCTCATGGTGTGGTG
ATTCACCAACCCTAAAACTAATTTCCTTGCTACCTCCTAACTCTTAACTT
TGCTAN
NCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTCAGAATTTTCTCAGTGTCTT
GTCTATGGGCATCCATAGCTGCACAATGAAGTCAAAAGCAGCCCCAGCAG
GGTCAGAGACAGCTATGCGGTGTACTTGTTGGAGCAGAGGAGAAACTGAC
CCACACGTAACGAAAGATGCCTGGCCTCAGAAAAGCAGACTTCTCAGAAA
AACCATCCTCCTGTGGTGGAGCTATGGGGAACACGTTTGCAGGTCCTAGT
ACCTCTGTTTGTAGGGTCCCTTGGAGATCTACTGCTTCTGACTTCTGAGC
TTCCCTTTGATGCTTGCTGCCCCTCCCTAACCCCTTCCTCAGACATTCTC
ACGAAGCCCAACTTTCCCTAGGAAAACTGCTGGTTTACAAGGACCTGGTT
CATTCTTTCAGACACGCCCGCTGTCACTAAACACGTAGTGCATCAACTAA
TGAATACAGAACCTATAGCCCTGCCCAGATATTGCTGCATTTTCAAAAGG
AGGAAGAAATGACCTGTAGGTCAAAGGTCAACTCTCTTTCCAATAACTAC
AAAGTTGGGGCCCATGCCTGGGTAGTAGTGAGACTTCAGGGAGCCTAGTT
TAGCTCCTGAGGACCAACAATGAATCAAAGCTCTCTTCTAAAAGCAGGTG
CAAAGCCACCTATTTCCTTTGAGCCTTCCTGGCTTGCTCATCGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_p11.b1 MSMg01no542_p11.b1 CHROMAT_FILE:
MSMg01no542_p11.b1 PHD_FILE: MSMg01no542_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:10 2005
         (646 letters)



>mm_chr15_12410544_12411591
          Length = 1048

 Score = 1125 bits (582), Expect = 0.0
 Identities = 628/644 (97%), Gaps = 2/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatattttatgtatattttctctttgtgccttcttcccctaaacccgtgcag 64
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctttatattttatgtatattgtctctttgtgccttcttcccctaaactcgtgcag 264

                                                                       
Query: 65  ctcggaggagacgtgtagtggctgcctggcactgagactaatcaccatggactacccgag 124
           ||| ||||||||||||||||||||||   ||||||||||||||| |||||||||||||||
Sbjct: 265 ctccgaggagacgtgtagtggctgcccaacactgagactaatcagcatggactacccgag 324

                                                                       
Query: 125 tatctcttcctggccgtgcagaaccatttcctgggaggatgaataaagctttattttagg 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatctcttcctggctgtgcagaaccatttcctgggaggatgaataaagctttattttagg 384

                                                                       
Query: 185 gggaatctgcttgttgaacatctgcagcagattttcacagatattaaaagctgtctggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggaatctgcttgttgaacatctgcagcagattttcacagatattaaaagctgtctggtt 444

                                                                       
Query: 245 tcaaatcagacttggaacaaacagtccaaacctctgtcattcgaaaaggctagatcttga 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaatcagacttggaacacacagtccaaacctctgtcattcgaaaaggctagatcttga 504

                                                                       
Query: 305 agctttttgccacccaggacaacaaaagaggggggaaggaaggcagccactgccttctgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctttttgccacccaggacaacaaaagaggggggaaggaaggcagccactgccttctgg 564

                                                                       
Query: 365 atacagaacaacatcctgggacttgcatatacttgctcacctgcagcatctgctctagag 424
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 565 atacaaaacaacatcctgggacttgcatatacttgctcacctgcagcatctgctttagat 624

                                                                       
Query: 425 cgcagtggaaaagtgactgcaaaatgagcagag--tgtgaaatgattcatcaaccgctga 482
           |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 625 cgcagtggaaaagtgattgcaaaatgagcagagagtgtgaaatgattcatcaaccgctga 684

                                                                       
Query: 483 cagaatcaccctagtcaggaaatgagaaatcccgattcctcctccctgcccccagtaggc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagaatcaccctagtcaggaaatgagaaatcccgattcctcctccctgcccccagtaggc 744

                                                                       
Query: 543 tgttagtcctacgaaagtgttgcttctgcatatagagggtccatataaggcagtggctct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 tgttagtcctacgaaagtgttgcttctgcatatagagggtccatataagacagtggctct 804

                                                       
Query: 603 caaccttcctaatgctgggtccctttaatacatttcctcatggt 646
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaccttcctaatgctgggtccctttaatacatttcctcatggt 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space:   660168
Effective search space used:   660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no542_p11.g1 MSMg01no542_p11.g1 CHROMAT_FILE:
MSMg01no542_p11.g1 PHD_FILE: MSMg01no542_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:10 2005
         (670 letters)



>mm_chr15_12579932_12581001
          Length = 1070

 Score = 1135 bits (587), Expect = 0.0
 Identities = 641/669 (95%), Gaps = 16/669 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcagaattttctcagtgtcttgtctatgggcatccatagctgcacaatgaagtcaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 958 atctcagaattttctcagtgtcttgtctatgggcatccatagctgcacaatgaagtcaga 899

                                                                       
Query: 61  agcagccccagcagggtcagagacagctatgcggtgtacttgttggagcagaggagaaac 120
           |||||||||||||||||||||||||||||                |||||||||||||||
Sbjct: 898 agcagccccagcagggtcagagacagcta----------------gagcagaggagaaac 855

                                                                       
Query: 121 tgacccacacgtaacgaaagatgcctggcctcagaaaagcagacttctcagaaaaaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgacccacacgtaacgaaagatgcctggcctcagaaaagcagacttctcagaaaaaccat 795

                                                                       
Query: 181 cctcctgtggtggagctatggggaacacgtttgcaggtcctagtacctctgtttgtaggg 240
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 794 cctcctgtggtggagctatggggaacacgtttgtgggtcctagtacctctgtttgtaggg 735

                                                                       
Query: 241 tcccttggagatctactgcttctgacttctgagcttccctttgatgcttgctgcccctcc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 734 tcccttggagatctactgcttctgacttcggagcttccctttgatgcttgctgcccctcc 675

                                                                       
Query: 301 ctaaccccttcctcagacattctcacgaagcccaactttccctaggaaaactgctggttt 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 674 ctaaccccttcctcagacattctcacgcagcccaactttccctaggaaaactgttggttt 615

                                                                       
Query: 361 acaaggacctggttcattctttcagacacgcccgctgtcactaaacacgtagtgcatcaa 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 614 acaaggacctggttcattctttcagacacgcccactgtcactaaacacgtagtgcatcaa 555

                                                                       
Query: 421 ctaatgaatacagaacctatagccctgcccagatattgctgcattttcaaaaggaggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctaatgaatacagaacctatagccctgcccagatattgctgcattttcaaaaggaggaag 495

                                                                       
Query: 481 aaatgacctgtaggtcaaaggtcaactctctttccaataactacaaagttggggcccatg 540
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 494 aaatgacctgtaggtcaaaggtcaactcactttccaataactacaaagttagggcccatg 435

                                                                       
Query: 541 cctgggtagtagtgagacttcagggagcctagtttagctcctgaggaccaacaatgaatc 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 434 cctgggtagtagtgagactccagggagcctagtttagctcctgaggaccaacactgaatc 375

                                                                       
Query: 601 aaagctctcttctaaaagcaggtgcaaagccacctatttcctttgagccttcctggcttg 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 aaagctctcttctaaaagcaggtgcaaagccacctatttcctttgagccttcatggcttg 315

                    
Query: 661 ctcatcgca 669
           |||||||||
Sbjct: 314 ctcatcgca 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)