Query= MSMg01no542_p11.b1 MSMg01no542_p11.b1 CHROMAT_FILE:
MSMg01no542_p11.b1 PHD_FILE: MSMg01no542_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:10 2005
(646 letters)
>mm_chr15_12410544_12411591
Length = 1048
Score = 1125 bits (582), Expect = 0.0
Identities = 628/644 (97%), Gaps = 2/644 (0%)
Strand = Plus / Plus
Query: 5 gaattctttatattttatgtatattttctctttgtgccttcttcccctaaacccgtgcag 64
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctttatattttatgtatattgtctctttgtgccttcttcccctaaactcgtgcag 264
Query: 65 ctcggaggagacgtgtagtggctgcctggcactgagactaatcaccatggactacccgag 124
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 265 ctccgaggagacgtgtagtggctgcccaacactgagactaatcagcatggactacccgag 324
Query: 125 tatctcttcctggccgtgcagaaccatttcctgggaggatgaataaagctttattttagg 184
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatctcttcctggctgtgcagaaccatttcctgggaggatgaataaagctttattttagg 384
Query: 185 gggaatctgcttgttgaacatctgcagcagattttcacagatattaaaagctgtctggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggaatctgcttgttgaacatctgcagcagattttcacagatattaaaagctgtctggtt 444
Query: 245 tcaaatcagacttggaacaaacagtccaaacctctgtcattcgaaaaggctagatcttga 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaatcagacttggaacacacagtccaaacctctgtcattcgaaaaggctagatcttga 504
Query: 305 agctttttgccacccaggacaacaaaagaggggggaaggaaggcagccactgccttctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctttttgccacccaggacaacaaaagaggggggaaggaaggcagccactgccttctgg 564
Query: 365 atacagaacaacatcctgggacttgcatatacttgctcacctgcagcatctgctctagag 424
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 atacaaaacaacatcctgggacttgcatatacttgctcacctgcagcatctgctttagat 624
Query: 425 cgcagtggaaaagtgactgcaaaatgagcagag--tgtgaaatgattcatcaaccgctga 482
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 cgcagtggaaaagtgattgcaaaatgagcagagagtgtgaaatgattcatcaaccgctga 684
Query: 483 cagaatcaccctagtcaggaaatgagaaatcccgattcctcctccctgcccccagtaggc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagaatcaccctagtcaggaaatgagaaatcccgattcctcctccctgcccccagtaggc 744
Query: 543 tgttagtcctacgaaagtgttgcttctgcatatagagggtccatataaggcagtggctct 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 tgttagtcctacgaaagtgttgcttctgcatatagagggtccatataagacagtggctct 804
Query: 603 caaccttcctaatgctgggtccctttaatacatttcctcatggt 646
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaccttcctaatgctgggtccctttaatacatttcctcatggt 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space: 660168
Effective search space used: 660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_p11.g1 MSMg01no542_p11.g1 CHROMAT_FILE:
MSMg01no542_p11.g1 PHD_FILE: MSMg01no542_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:10 2005
(670 letters)
>mm_chr15_12579932_12581001
Length = 1070
Score = 1135 bits (587), Expect = 0.0
Identities = 641/669 (95%), Gaps = 16/669 (2%)
Strand = Plus / Minus
Query: 1 atctcagaattttctcagtgtcttgtctatgggcatccatagctgcacaatgaagtcaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 958 atctcagaattttctcagtgtcttgtctatgggcatccatagctgcacaatgaagtcaga 899
Query: 61 agcagccccagcagggtcagagacagctatgcggtgtacttgttggagcagaggagaaac 120
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 898 agcagccccagcagggtcagagacagcta----------------gagcagaggagaaac 855
Query: 121 tgacccacacgtaacgaaagatgcctggcctcagaaaagcagacttctcagaaaaaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tgacccacacgtaacgaaagatgcctggcctcagaaaagcagacttctcagaaaaaccat 795
Query: 181 cctcctgtggtggagctatggggaacacgtttgcaggtcctagtacctctgtttgtaggg 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 794 cctcctgtggtggagctatggggaacacgtttgtgggtcctagtacctctgtttgtaggg 735
Query: 241 tcccttggagatctactgcttctgacttctgagcttccctttgatgcttgctgcccctcc 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 734 tcccttggagatctactgcttctgacttcggagcttccctttgatgcttgctgcccctcc 675
Query: 301 ctaaccccttcctcagacattctcacgaagcccaactttccctaggaaaactgctggttt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 674 ctaaccccttcctcagacattctcacgcagcccaactttccctaggaaaactgttggttt 615
Query: 361 acaaggacctggttcattctttcagacacgcccgctgtcactaaacacgtagtgcatcaa 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 614 acaaggacctggttcattctttcagacacgcccactgtcactaaacacgtagtgcatcaa 555
Query: 421 ctaatgaatacagaacctatagccctgcccagatattgctgcattttcaaaaggaggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctaatgaatacagaacctatagccctgcccagatattgctgcattttcaaaaggaggaag 495
Query: 481 aaatgacctgtaggtcaaaggtcaactctctttccaataactacaaagttggggcccatg 540
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 494 aaatgacctgtaggtcaaaggtcaactcactttccaataactacaaagttagggcccatg 435
Query: 541 cctgggtagtagtgagacttcagggagcctagtttagctcctgaggaccaacaatgaatc 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 434 cctgggtagtagtgagactccagggagcctagtttagctcctgaggaccaacactgaatc 375
Query: 601 aaagctctcttctaaaagcaggtgcaaagccacctatttcctttgagccttcctggcttg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 aaagctctcttctaaaagcaggtgcaaagccacctatttcctttgagccttcatggcttg 315
Query: 661 ctcatcgca 669
|||||||||
Sbjct: 314 ctcatcgca 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|